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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G448300
Reference: TK1151 Chr: Chr03 Coordinates: 111840682-111843196 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1734 bp · TkA03G448300|TK1151|cDNA

CAGCTCAAAAGTATATCTTTTTGTATTAGCCACTGAACTTTACTTTCTTGCTTTTAGCCCTTACCATCTTCCCAGAAGTTCCTTTCGGGTTGTTGCTTATACACCGTCGTTACTTTATGTCATAGAAAATCCGTTAACTTCTTCTCATTTTCATTTCCACATTTCTCTCAGCCATCATAGCATCGAGGGCTTTTGCTTTACTCATTTCCCAGTCTCCATTCTTCCAATATTGGGCAAGATCGTGCCTTTTTCGTCATCGG...

CDS

Download CDS FASTA

1038 bp · TkA03G448300|TK1151|CDS

ATGACCATCAAAGGCGCAGATTTTAAGTGGTACGATGGGTTTTTCCTATCGATGCTTGCCACTAGTATAATAATCATTGCGATCAATTGGAACCATTACCATCTCTGCACCCACCCATTGCACATATGGATTGTGGTCGACTACTCAACAGTTTTCGTTTTCCGTCTCTTGATGTTTGTGGACAATGGACTCGCTGCAGGAATGGGATTGGATTTTGGCCGACAACAAAGGCACGCTCGTTTTTGTGGAAGAGTTGCAGT...

Protein

Download Protein FASTA

345 aa · TkA03G448300|TK1151|PROTEIN

MTIKGADFKWYDGFFLSMLATSIIIIAINWNHYHLCTHPLHIWIVVDYSTVFVFRLLMFVDNGLAAGMGLDFGRQQRHARFCGRVAVLSILCILLYPFLWAWTIIGSLWFSSARDCLPEEGQKWGFLIWLLFSYCGLICLAGMSMKTWLRRRQAHALRAQQGIPLSEYGVLVDMIRVPDFAFESAAGQELRGMGQDAASYHPGLYLTEPQREAVEALIQELPKFMLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G448300
TK1151 IDTkA03G448300
OH-1004 IDLXL04_009555
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G448300
LocationChr03:111840682-111843196 (-)
DescriptionSimilar to SIS3: E3 ubiquitin-protein ligase SIS3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47990 E3 ubiquitin protein ligase that acts as a positive regulator of sugar signaling during early seedling development.
SUGAR-INSENSITIVE3, a RING E3 ligase, is a new player in plant sugar response.2010 · DOI: 10.1104/pp.109.150573

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009555 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006952 defense response Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0033591 response to L-ascorbic acid Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G22500
ath:AT2G17730
ath:AT3G47990
ath:AT4G11680
ath:AT5G66070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.289
Rank 1 · TkA03G448300 · TK1151
Cytoplasm0.278
Rank 2 · TkA03G448300 · TK1151
Endoplasmic reticulum0.252
Rank 3 · TkA03G448300 · TK1151
Cell membrane0.218
Rank 4 · TkA03G448300 · TK1151
Lysosome / Vacuole0.218
Rank 5 · TkA03G448300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26753SIS3_N11-161 aa
PF12822ECF_trnsprt24-105 aa
PF12861zf-ANAPC1135-45 aa
PF12822ECF_trnsprt121-143 aa
PF13920zf-C3HC4_3234-280 aa
PF13639zf-RING_2235-277 aa
PF17123zf-RING_11235-263 aa
PF13923zf-C3HC4_2235-276 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G448300PF26753SIS3_N111618.1e-70234.2
TkA03G448300PF12822ECF_trnsprt241050.511.0
TkA03G448300PF12861zf-ANAPC1135450.005517.4
TkA03G448300PF12822ECF_trnsprt1211430.511.0
TkA03G448300PF13920zf-C3HC4_32342800.04114.4
TkA03G448300PF13639zf-RING_22352771.7e-1454.5
TkA03G448300PF17123zf-RING_112352631.7e-0937.9
TkA03G448300PF13923zf-C3HC4_22352761.9e-0834.7
TkA03G448300PF14634zf-RING_52352770.0001822.1
TkA03G448300PF11793FANCL_C2352720.1513.1
TkA03G448300PF00097zf-C3HC42362765.9e-0833.2
TkA03G448300PF13445zf-RING_UBOX2362748.4e-0832.8
TkA03G448300PF12861zf-ANAPC112362790.005517.4
TkA03G448300PF14570zf-RING_42362780.0813.5
TkA03G448300PF08746zf-RING-like2362762.29.2
TkA03G448300PF12678zf-rbx12472773.6e-0524.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GYT9Arabidopsis thalianasp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS368.600%Swiss-ProtHigh

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