TkA03G045200 | RubberDandelionOmics

Gene overview

TkA03G045200

Reference: TK1151 Chr: Chr03 Coordinates: 11921994-11926691 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1503 bp · TkA03G045200|TK1151|cDNA

ATGTCTTCAATCATGGAAGACTTTGATCACCTCAAAATTGAAATGGAAGACATAAGATCGGCAACCTACAACTTCAGTCAAGACAAATGGATCGGAGGTGGTGGCTTTGGCCCAGTGTACAAAGGTGAACTCACCCTTCCCTCAGGACCAACTATGGTGGCTTATAAGCGGTTAAATCGTAGATACGGGCAAGGGAACACCGAGTTTTGGAAGGAGGTCATGATGCTTTCCAAATACAAACATGAAAACTTGATCTCTCT...

CDS

Download CDS FASTA

1503 bp · TkA03G045200|TK1151|CDS

ATGTCTTCAATCATGGAAGACTTTGATCACCTCAAAATTGAAATGGAAGACATAAGATCGGCAACCTACAACTTCAGTCAAGACAAATGGATCGGAGGTGGTGGCTTTGGCCCAGTGTACAAAGGTGAACTCACCCTTCCCTCAGGACCAACTATGGTGGCTTATAAGCGGTTAAATCGTAGATACGGGCAAGGGAACACCGAGTTTTGGAAGGAGGTCATGATGCTTTCCAAATACAAACATGAAAACTTGATCTCTCT...

Protein

Download Protein FASTA

500 aa · TkA03G045200|TK1151|PROTEIN

MSSIMEDFDHLKIEMEDIRSATYNFSQDKWIGGGGFGPVYKGELTLPSGPTMVAYKRLNRRYGQGNTEFWKEVMMLSKYKHENLISLLHFSIEGDERVLVYEYAPRGSLDCYLGDASLTWKQRLHICIGAARALNYLHNPMETQQRVLHRDIKSSNILLDENWGAKVSDFGLSKLGPANQAQTYVVSTPVGTIGYCDPLYWEFGLLTKESDVYSFGVVLFEVMCGRLCCEYDRNNKLIGILVPNWKKCFDENKLDNIIFQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G045200`
TK1151 ID	TkA03G045200
OH-1004 ID	LXL04_006527
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	76.800
Protein coverage (%)	TK1151 74.000 / OH-1004 85.648 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G045200

Location Chr03:11921994-11926691 (+)

Description Similar to At5g39000: Putative receptor-like protein kinase At5g39000

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006527 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

KEGG gene cross-reference

ath:AT3G46290

ath:AT3G51550

ath:AT5G38990

ath:AT5G39000

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.539

Rank 1 · TkA03G045200 · TK1151

Nucleus0.304

Rank 2 · TkA03G045200 · TK1151

Cell membrane0.293

Rank 3 · TkA03G045200 · TK1151

Endoplasmic reticulum0.061

Rank 4 · TkA03G045200 · TK1151

Lysosome / Vacuole0.047

Rank 5 · TkA03G045200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase26-297 aa

PF07714PK_Tyr_Ser-Thr27-299 aa

PF01636APH133-178 aa

PF14531Kinase-like144-230 aa

PF14531Kinase-like390-420 aa

PF14299PP2398-474 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G045200	`PF00069`	Pkinase	26	297	3e-38	132.5
TkA03G045200	`PF07714`	PK_Tyr_Ser-Thr	27	299	5.1e-41	141.4
TkA03G045200	`PF01636`	APH	133	178	0.0085	16.6
TkA03G045200	`PF14531`	Kinase-like	144	230	0.029	14.3
TkA03G045200	`PF14531`	Kinase-like	390	420	0.029	14.3
TkA03G045200	`PF14299`	PP2	398	474	0.025	15.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	44.400%	Swiss-Prot	Medium
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	43.400%	Swiss-Prot	Medium
`Q9FID9`	Arabidopsis thaliana	sp\|Q9FID9\|Y5389_ARATH Probable receptor-like protein kinase At5g38990	43.900%	Swiss-Prot	Medium
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	42.800%	Swiss-Prot	Medium
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	44.300%	Swiss-Prot	Medium

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