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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G016250
Reference: TK1151 Chr: Chr03 Coordinates: 4189798-4193018 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1584 bp · TkA03G016250|TK1151|cDNA

TGAAATTGGTCTCTGCTGGTTCCTTTGTTCTTCGGTTCTCGGATTCACGTTCAATTTGTTGAAAAGTTTTCATTGGAATTCGCAGGTACTCGATTTCGGCCGCTTTCGTTTAATACTCCGAAACCTCTTTTTCCTCTAGCTGGTCAGCCGATGGTTCATCACCCAATTTCTGCTTGTAAATCGATCCCTAATTTGGCACAAATTTTCCTAATTGGATTTCACGACGAGAGGGAATTCGCATTGTACGTGTCGTCAATCTC...

CDS

Download CDS FASTA

1248 bp · TkA03G016250|TK1151|CDS

ATGATAAAGTCGGAGGAGAAGGTGGTGGCCGTGATCATGGTTGGTGGTCCGACGAAAGGTACTCGATTTCGGCCGCTTTCGTTTAATACTCCGAAACCTCTTTTTCCTCTAGCTGGTCAGCCGATGGTTCATCACCCAATTTCTGCTTGTAAATCGATCCCTAATTTGGCACAAATTTTCCTAATTGGATTTCACGACGAGAGGGAATTCGCATTGTACGTGTCGTCAATCTCCAGCGAACTCAAAATCCCAGTCAGATA...

Protein

Download Protein FASTA

415 aa · TkA03G016250|TK1151|PROTEIN

MIKSEEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMVHHPISACKSIPNLAQIFLIGFHDEREFALYVSSISSELKIPVRYLKEDKPHGSAGGLYYFKDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRRYGGMGTLLVIKVSAESASEFGELVADSVTKELLHYTEKPETFVSDLINCGVYVFTPEIFNVIQDIRTHHEDRVNLHTLSNYDALRLTTKTPTKDFVRLDQDILSPLAGKKKLYTYETMDFWEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G016250
TK1151 IDTkA03G016250
OH-1004 IDLXL04_009597
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)76.100
Protein coverage (%)TK1151 100.000 / OH-1004 99.520
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G016250
LocationChr03:4189798-4193018 (-)
DescriptionSimilar to gmppA: Mannose-1-phosphate guanyltransferase alpha
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009597 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009298 GDP-mannose biosynthetic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0004475 mannose-1-phosphate guanylyltransferase (GTP) activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0016740 transferase activity Molecular Function
GO:0016779 nucleotidyltransferase activity Molecular Function
KEGG gene cross-reference
ddi:DDB_G0271858
dre:393469
xla:444472
xtr:779654
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.624
Rank 1 · TkA03G016250 · TK1151
Nucleus0.225
Rank 2 · TkA03G016250 · TK1151
Peroxisome0.104
Rank 3 · TkA03G016250 · TK1151
Mitochondrion0.102
Rank 4 · TkA03G016250 · TK1151
Cell membrane0.071
Rank 5 · TkA03G016250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00483NTP_transferase10-207 aa
PF12804NTP_transf_310-122 aa
PF02348CTP_transf_332-61 aa
PF24894Hexapep_GlmU282-327 aa
PF25087GMPPB_C297-414 aa
PF25084LbH_EIF2B298-368 aa
PF00132Hexapep300-328 aa
PF24894Hexapep_GlmU321-358 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G016250PF00483NTP_transferase102074e-31109.2
TkA03G016250PF12804NTP_transf_3101229.4e-0523.4
TkA03G016250PF02348CTP_transf_332610.09113.3
TkA03G016250PF24894Hexapep_GlmU2823270.003418.2
TkA03G016250PF25087GMPPB_C2974141.9e-37128.1
TkA03G016250PF25084LbH_EIF2B2983682.9e-0628.0
TkA03G016250PF00132Hexapep3003282.2e-0627.9
TkA03G016250PF24894Hexapep_GlmU3213580.003418.2
TkA03G016250PF00132Hexapep3353502.2e-0627.9
TkA03G016250PF00132Hexapep3803982.2e-0627.9
TkA03G016250PF24894Hexapep_GlmU3804040.003418.2
TkA03G016250PF25084LbH_EIF2B3814022.9e-0628.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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