TkA03G005670 | RubberDandelionOmics

Gene overview

TkA03G005670

Reference: TK1151 Chr: Chr03 Coordinates: 1366721-1369109 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1878 bp · TkA03G005670|TK1151|cDNA

CACCAACCCTTAAATTCCTAAAAGCACAATTCCTATAACTTCCACTTTGCCTTCTACCTATTATATCACACCATTTTCCGAACTAAACCCCCACATCATACGTAAAATGTTTTGTATAACCTCCATTATCTATGCCAGTATCATTGTTCTCGTAGTCTATGTGTTCTATAAATTAGACACCCGTTATCCTAACGGCCTCCCTCCCGGCCCAACCCCATGGCCCATAGTCGGAAACCTACCTCACCTCGGTCCAATTCCAC...

CDS

Download CDS FASTA

813 bp · TkA03G005670|TK1151|CDS

ATGTTTTGTATAACCTCCATTATCTATGCCAGTATCATTGTTCTCGTAGTCTATGTGTTCTATAAATTAGACACCCGTTATCCTAACGGCCTCCCTCCCGGCCCAACCCCATGGCCCATAGTCGGAAACCTACCTCACCTCGGTCCAATTCCACACCACTCACTGGCAACTTTAGCTACACAATATGGACCTTTGATGCACCTCCGGTTCGGCTTTGTTAATGTGGTGGTGGCGGCATCAGCGTCTGTAGCCAAACAATT...

Protein

Download Protein FASTA

270 aa · TkA03G005670|TK1151|PROTEIN

MFCITSIIYASIIVLVVYVFYKLDTRYPNGLPPGPTPWPIVGNLPHLGPIPHHSLATLATQYGPLMHLRFGFVNVVVAASASVAKQFLKDHDAKFSSRPPSSGGKHIAYNYQDLVFAPYGPRWRMLRKICSVHLFSNKALDDFVHVRQEEVAILTRTLFGAGQSPVKLGQLLSICTTNALARVTIGIRVVGNGSRGGDPKADVVNDMVVELIQLAGEFNIGDFIPVLDWLDLQGVAGKMKKLHKRFDSFLNSILEEHKSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G005670`
TK1151 ID	TkA03G005670
OH-1004 ID	LXL04_030590
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.259 / OH-1004 52.344 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G005670

Location Chr03:1366721-1369109 (+)

Description Similar to CYP75B1: Flavonoid 3'-monooxygenase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g07990`	Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0320100`	Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state.	No verified direct reference in this release
`Os10g0317900`	Catalyzes the 3'-hydroxylation of the flavonoid B-ring to the 3',4'-hydroxylated state.	Completion of Tricin Biosynthesis Pathway in Rice: Cytochrome P450 75B4 Is a Unique Chrysoeriol 5'-Hydroxylase.2015 · DOI: 10.1104/pp.15.00566

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030590 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009411 response to UV Biological Process

GO:0009733 response to auxin Biological Process

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0080027 response to herbivore Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0005506 iron ion binding Molecular Function

GO:0010333 terpene synthase activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Molecular Function

GO:0016711 flavonoid 3'-monooxygenase activity Molecular Function

KEGG gene cross-reference

ag:AAD56282

ath:AT5G07990

dosa:Os10g0320100

osa:4348304

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.928

Rank 1 · TkA03G005670 · TK1151

Cytoplasm0.030

Rank 2 · TkA03G005670 · TK1151

Golgi apparatus0.030

Rank 3 · TkA03G005670 · TK1151

Cell membrane0.030

Rank 4 · TkA03G005670 · TK1151

Plastid0.028

Rank 5 · TkA03G005670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067p45032-259 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G005670	`PF00067`	p450	32	259	3.6e-28	99.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SD85`	Arabidopsis thaliana	sp\|Q9SD85\|F3PH_ARATH Flavonoid 3'-monooxygenase	63.200%	Swiss-Prot	High
`Q7G602`	Oryza sativa subsp. japonica	sp\|Q7G602\|C75B3_ORYSJ Flavonoid 3'-monooxygenase CYP75B3	59.300%	Swiss-Prot	High
`Q8LM92`	Oryza sativa subsp. japonica	sp\|Q8LM92\|C75B4_ORYSJ Flavonoid 3'-monooxygenase CYP75B4	48.800%	Swiss-Prot	Medium

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