TkA02G444290 | RubberDandelionOmics

Gene overview

TkA02G444290

Reference: TK1151 Chr: Chr02 Coordinates: 112893351-112897648 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

750 bp · TkA02G444290|TK1151|cDNA

ATATTGTTTTCATGAATGATTAACCAAAAAAACGTTAAACTGTCCTGGGTGCCAGAGTCCCGTCCTGATCTGATCTTGACTGGTCATCAAGAAAATGCAGAATTTGCTCTTGCTATGTGCCAAAGTGAACCATTTGTACTTTGGAGGCAAGGACAAATCAGTTGTGTTGTTGAGTATTGATGATCATATCTCGAGTTTGGAAACAGAGTCACCTGGATCCAATGGCCCCAAGACTGAACATAAGGTTACAGACAGCCCAA...

CDS

Download CDS FASTA

417 bp · TkA02G444290|TK1151|CDS

ATGATCATATCTCGAGTTTGGAAACAGAGTCACCTGGATCCAATGGCCCCAAGACTGAACATAAGGTTACAGACAGCCCAAAAATTCAAGCAAGGGGGATCTATCAAGGCCATTCAGACACTGTTGAAGATGTACAGTTTTGCCCCTGCAGTGCACAAGAGTTTTAAAGTGTCGGTGATGACATGTGTCTTATTTTATGGGATGCGAGAACCGGATCTTCTCCTGTTGTTAAGGTTGTTGAACGTTCTGGTCCAGCCTCG...

Protein

Download Protein FASTA

138 aa · TkA02G444290|TK1151|PROTEIN

MIISRVWKQSHLDPMAPRLNIRLQTAQKFKQGGSIKAIQTLLKMYSFAPAVHKSFKVSVMTCVLFYGMREPDLLLLLRLLNVLVQPRNLHPVYCSVTLDTGKRHDLHTQQETHNKNLGHNISLIRCGDNMISFCSQFS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G444290`
TK1151 ID	TkA02G444290
OH-1004 ID	LXL04_019116
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	63.900
Protein coverage (%)	TK1151 88.406 / OH-1004 52.093 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G444290`
Location	Chr02:112893351-112897648 (+)
Description	Similar to MSI4: WD-40 repeat-containing protein MSI4
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_019116` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009627 systemic acquired resistance Biological Process GO:0009908 flower development Biological Process GO:0010224 response to UV-B Biological Process GO:0010629 negative regulation of gene expression Biological Process GO:0030154 cell differentiation Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process
KEGG gene cross-reference	ath:AT2G19520 ath:AT4G29730 dosa:Os03g0640100 sly:543534 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.419

Rank 1 · TkA02G444290 · TK1151

Nucleus0.347

Rank 2 · TkA02G444290 · TK1151

Mitochondrion0.227

Rank 3 · TkA02G444290 · TK1151

Cell membrane0.089

Rank 4 · TkA02G444290 · TK1151

Endoplasmic reticulum0.071

Rank 5 · TkA02G444290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00175NAD_binding_146-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G444290	`PF00175`	NAD_binding_1	46	133	0.23	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card