TkA01G200860 | RubberDandelionOmics

Gene overview

TkA01G200860

Reference: TK1151 Chr: Chr01 Coordinates: 51190969-51194159 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1457 bp · TkA01G200860|TK1151|cDNA

AATCATCACTTCCACCATTACTTAATTATAACTCAACTCACTATAAATAATACAAATAACTCAACTCACTATAAATAATCATCACTTCCACCATAATACAAAGCGGACATGACCGATACAACCCACCAAGAAGAAAAAAAAAGTATTTCATTTTAGAAGTACGAAAATGGCGAATGTTCCAAGAATCAGATTGGGTTCACAGGGTTTGGAGGTATCAGCTCAAGGTTTGGGTTGTATGGGCATGTCCGCTTTCTATGGAC...

CDS

Download CDS FASTA

1029 bp · TkA01G200860|TK1151|CDS

ATGGCGAATGTTCCAAGAATCAGATTGGGTTCACAGGGTTTGGAGGTATCAGCTCAAGGTTTGGGTTGTATGGGCATGTCCGCTTTCTATGGACCCCCAAAACCCGAACCTGACATGATTAGCCTCATCCACCACGCCATCGATGCCGGTGTCACCCTTCTCGACACCTCCGATGTCTATGGCCCTAAAACCAATGAAATCCTACTTGGAAAGGCTTTGAAGGGAGAGGTAAGGAAGAAAGTAGAGTTGGCTACCAAATA...

Protein

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342 aa · TkA01G200860|TK1151|PROTEIN

MANVPRIRLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMISLIHHAIDAGVTLLDTSDVYGPKTNEILLGKALKGEVRKKVELATKYGINTEDGAYEIRGDPAYVRAACEASLKRLDIDCIDLYYQHRIDTRVPIEITMGEMKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEQEIIPTCRELGIGIVAYSPLGRGFLSLGPKMAENLTDGDFRQSLPRFQGENLEHNKMLYEKVSAIAEKKGCT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G200860`
TK1151 ID	TkA01G200860
OH-1004 ID	LXL04_004112
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G200860

Location Chr01:51190969-51194159 (+)

Description Similar to At1g60710: Probable aldo-keto reductase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g60710`	Probable aldo-keto reductase 4.	No verified direct reference in this release
`At1g60690`	Probable aldo-keto reductase 3.	No verified direct reference in this release
`At1g60730`	Probable aldo-keto reductase 5.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0338000`	Probable aldo-keto reductase 2.	No verified direct reference in this release
`UniProt: A2XRZ0`	Probable aldo-keto reductase 2.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004112 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0008106 alcohol dehydrogenase (NADP+) activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G60690

ath:AT1G60710

ath:AT1G60730

dosa:Os04g0338000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.745

Rank 1 · TkA01G200860 · TK1151

Nucleus0.277

Rank 2 · TkA01G200860 · TK1151

Mitochondrion0.094

Rank 3 · TkA01G200860 · TK1151

Peroxisome0.088

Rank 4 · TkA01G200860 · TK1151

Cell membrane0.063

Rank 5 · TkA01G200860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00248Aldo_ket_red23-310 aa

PF24878YkcB_C137-159 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G200860	`PF00248`	Aldo_ket_red	23	310	2.1e-72	244.4
TkA01G200860	`PF24878`	YkcB_C	137	159	0.27	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZN2`	Arabidopsis thaliana	sp\|Q93ZN2\|ALKR4_ARATH Probable aldo-keto reductase 4	79.400%	Swiss-Prot	High
`O22707`	Arabidopsis thaliana	sp\|O22707\|ALKR3_ARATH Probable aldo-keto reductase 3	78.700%	Swiss-Prot	High
`Q9ASZ9`	Arabidopsis thaliana	sp\|Q9ASZ9\|ALKR5_ARATH Probable aldo-keto reductase 5	77.600%	Swiss-Prot	High
`Q7XT99`	Oryza sativa subsp. japonica	sp\|Q7XT99\|AKR2_ORYSJ Probable aldo-keto reductase 2	77.800%	Swiss-Prot	High
`A2XRZ0`	Oryza sativa subsp. indica	sp\|A2XRZ0\|AKR2_ORYSI Probable aldo-keto reductase 2	77.800%	Swiss-Prot	High

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