TkA01G145780 | RubberDandelionOmics

Gene overview

TkA01G145780

Reference: TK1151 Chr: Chr01 Coordinates: 36941334-36952865 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2823 bp · TkA01G145780|TK1151|cDNA

ATATTATATATATATATAATGTGTATATGTCTTGCTTACTGACCAACAAATTGAGTTGAGCTTTCATCAAAGAAAATGACGATGACACGTGACTTATAGGACAGCGGTGGCGTGTCGTCTCCGGCGAAAAGCTTCAGCCTCTGTCTTTCTCCAATTTCATCTTTCACTTCACAACTACTTCGATTCTTTACTTAATATTGCTTTTCAGCAAAAGTAAACCAAATACTTTAAGCAAATTAGCTTTTTCAAGATGATTTAAG...

CDS

Download CDS FASTA

1953 bp · TkA01G145780|TK1151|CDS

ATGAAGCGATTTACAGCCAAAATAGTTGGCATGATGAAGGATGAGAATCTTTATGCTTCTCAAGGTGGACCCATAATTTTATCACAGATTGAGAACGAATATGGCAATATTGATAAAGATTACGGTCCTGCTGCACAAACATATATCAAATGGGCAGCGAGTATGGCTACATCTCTAGATACAGGAGTGCCATGGGTGATGTGTCAACAAAGAGATGCCCCCGATCCAATTATAGACACTTGCAACGGGTTTTATTGTGA...

Protein

Download Protein FASTA

650 aa · TkA01G145780|TK1151|PROTEIN

MKRFTAKIVGMMKDENLYASQGGPIILSQIENEYGNIDKDYGPAAQTYIKWAASMATSLDTGVPWVMCQQRDAPDPIIDTCNGFYCDGYTPNSKNKPTMWTENWTGWFLSFGGAVPYRPVQDIGFAVARFYQRGGTFQNYYMYHGGTNFGRSTGGPFIATSYDYDAPLDEYGAPRQPKFGHLKELHKAIKLCEDALVATDPKSTSLGNNIEASVYKTSTTCAAFLANIDTKKDATVNFNGNSYHLPAWSVSILPDCKNVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G145780`
TK1151 ID	TkA01G145780
OH-1004 ID	LXL04_004478
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.000
Protein coverage (%)	TK1151 99.077 / OH-1004 77.176 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G145780

Location Chr01:36941334-36952865 (-)

Description Similar to BGAL8: Beta-galactosidase 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28470`	Beta-galactosidase 8.	No verified direct reference in this release
`At3g13750`	Beta-galactosidase 1.	No verified direct reference in this release
`At4g36360`	Beta-galactosidase 3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0255100`	Releases galactose by hydrolysis of plant cell wall galactose-containing polysaccharides such as galacto-xyloglucan, pectic galactan and galactan (in vitro).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004478 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G28470

ath:AT3G13750

ath:AT4G36360

dosa:Os03g0255100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.800

Rank 1 · TkA01G145780 · TK1151

Cytoplasm0.075

Rank 2 · TkA01G145780 · TK1151

Cell membrane0.056

Rank 3 · TkA01G145780 · TK1151

Endoplasmic reticulum0.050

Rank 4 · TkA01G145780 · TK1151

Lysosome / Vacuole0.046

Rank 5 · TkA01G145780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01301Glyco_hydro_351-188 aa

PF21467BetaGal_gal-bd124-142 aa

PF17834GHD212-266 aa

PF13364BetaGal_ABD2326-387 aa

PF21467BetaGal_gal-bd327-387 aa

PF21467BetaGal_gal-bd466-553 aa

PF13364BetaGal_ABD2466-512 aa

PF02140SUEL_Lectin610-646 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G145780	`PF01301`	Glyco_hydro_35	1	188	7.2e-57	194.1
TkA01G145780	`PF21467`	BetaGal_gal-bd	124	142	1.6e-33	115.4
TkA01G145780	`PF17834`	GHD	212	266	3.6e-26	91.3
TkA01G145780	`PF13364`	BetaGal_ABD2	326	387	3.1e-05	25.4
TkA01G145780	`PF21467`	BetaGal_gal-bd	327	387	1.6e-33	115.4
TkA01G145780	`PF21467`	BetaGal_gal-bd	466	553	1.6e-33	115.4
TkA01G145780	`PF13364`	BetaGal_ABD2	466	512	3.1e-05	25.4
TkA01G145780	`PF02140`	SUEL_Lectin	610	646	0.00011	23.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCV4`	Arabidopsis thaliana	sp\|Q9SCV4\|BGAL8_ARATH Beta-galactosidase 8	66.900%	Swiss-Prot	High
`Q9SCW1`	Arabidopsis thaliana	sp\|Q9SCW1\|BGAL1_ARATH Beta-galactosidase 1	53.700%	Swiss-Prot	High
`Q9SCV9`	Arabidopsis thaliana	sp\|Q9SCV9\|BGAL3_ARATH Beta-galactosidase 3	52.500%	Swiss-Prot	High
`Q10NX8`	Oryza sativa subsp. japonica	sp\|Q10NX8\|BGAL6_ORYSJ Beta-galactosidase 6	64.800%	Swiss-Prot	High

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