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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G003360
Reference: TK1151 Chr: Chr01 Coordinates: 912840-920694 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2166 bp · TkA01G003360|TK1151|cDNA

ATGGAGTCTTTGGTTGCCTTATGTGATGCACTCTTGCCATCACTTAAAGTTTCTAAAGAGGGTGGTGTTGATGATTCACTTGTCAAACTATACCAAACTTCAGCTTCCATGACCGAAACTCCAAATCAAGTTGCAATGATGATGCTAATGAAGACGGAGCACCCAAAGCAAACCTTGGTTCGGTTGACCTTATGGCTCCTATCAACTGCAATCGGAACCTTGATTCTTTGTGGAAGGGAAAGTTTGTCTGATAACTTTCC...

CDS

Download CDS FASTA

2166 bp · TkA01G003360|TK1151|CDS

ATGGAGTCTTTGGTTGCCTTATGTGATGCACTCTTGCCATCACTTAAAGTTTCTAAAGAGGGTGGTGTTGATGATTCACTTGTCAAACTATACCAAACTTCAGCTTCCATGACCGAAACTCCAAATCAAGTTGCAATGATGATGCTAATGAAGACGGAGCACCCAAAGCAAACCTTGGTTCGGTTGACCTTATGGCTCCTATCAACTGCAATCGGAACCTTGATTCTTTGTGGAAGGGAAAGTTTGTCTGATAACTTTCC...

Protein

Download Protein FASTA

721 aa · TkA01G003360|TK1151|PROTEIN

MESLVALCDALLPSLKVSKEGGVDDSLVKLYQTSASMTETPNQVAMMMLMKTEHPKQTLVRLTLWLLSTAIGTLILCGRESLSDNFPYIQKFSRVSTKKREKILFSWSLSYFFLLRMFFRAIKIVVPLAFFTQVNEKNENPSWKAINYCGPDPNFIQQVHHNTTPQNIFGPLYNGVVYLNKPIQAVAESIQRSKLAISIPKNPKLPSMIIKCDAVVVGSGSGGGVIAGVLAKAGYKVLVLEKGNYHARSNLSLLEGPSME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G003360
TK1151 IDTkA01G003360
OH-1004 IDLXL04_014625
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)43.200
Protein coverage (%)TK1151 99.307 / OH-1004 95.962
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G003360
LocationChr01:912840-920694 (-)
DescriptionSimilar to FAO1: Long-chain-alcohol oxidase FAO1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g19380 Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation. No verified direct reference in this release
At3g23410 Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation.
Functional identification of AtFao3, a membrane bound long chain alcohol oxidase in Arabidopsis thaliana.2004 · DOI: 10.1016/j.febslet.2004.07.086
Cloning and characterization of long-chain fatty alcohol oxidase LjFAO1 in lotus japonicus.2008 · DOI: 10.1021/bp0703533
At1g03990 Long-chain fatty alcohol oxidase involved in the omega-oxidation pathway of lipid degradation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014625 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006066 alcohol metabolic process Biological Process
GO:0009409 response to cold Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0016020 membrane Cellular Component
GO:0046577 long-chain-alcohol oxidase activity Molecular Function
GO:0050660 flavin adenine dinucleotide binding Molecular Function
KEGG gene cross-reference
ag:CAP15762
ath:AT1G03990
ath:AT3G23410
ath:AT4G28570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.491
Rank 1 · TkA01G003360 · TK1151
Peroxisome0.331
Rank 2 · TkA01G003360 · TK1151
Cytoplasm0.114
Rank 3 · TkA01G003360 · TK1151
Nucleus0.052
Rank 4 · TkA01G003360 · TK1151
Endoplasmic reticulum0.048
Rank 5 · TkA01G003360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06444NADH_dehy_S2_C34-70 aa
PF01946Thi4209-242 aa
PF01494FAD_binding_3211-247 aa
PF00996GDI212-252 aa
PF00890FAD_binding_2213-246 aa
PF01266DAO213-243 aa
PF07992Pyr_redox_2213-245 aa
PF03486HI0933_like213-247 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G003360PF06444NADH_dehy_S2_C34700.2312.7
TkA01G003360PF01946Thi42092420.03913.9
TkA01G003360PF01494FAD_binding_32112470.004816.9
TkA01G003360PF00996GDI2122520.1511.3
TkA01G003360PF00890FAD_binding_22132460.0001222.1
TkA01G003360PF01266DAO2132430.005317.1
TkA01G003360PF07992Pyr_redox_22132450.01115.8
TkA01G003360PF03486HI0933_like2132470.1812.0
TkA01G003360PF02558ApbA2152480.02415.0
TkA01G003360PF027373HCDH_N2152560.1912.4
TkA01G003360PF13450NAD_binding_82162440.001619.4
TkA01G003360PF06240COXG2192400.1912.2
TkA01G003360PF06240COXG2422960.1912.2
TkA01G003360PF00732GMC_oxred_N2594803.5e-69233.6
TkA01G003360PF01266DAO3904690.005317.1
TkA01G003360PF00890FAD_binding_24024620.0001222.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O65709Arabidopsis thalianasp|O65709|FAO4A_ARATH Long-chain-alcohol oxidase FAO4A60.500%Swiss-ProtHigh
Q9LW56Arabidopsis thalianasp|Q9LW56|FAO3_ARATH Long-chain-alcohol oxidase FAO343.100%Swiss-ProtMedium
Q9ZWB9Arabidopsis thalianasp|Q9ZWB9|FAO1_ARATH Long-chain-alcohol oxidase FAO141.400%Swiss-ProtMedium

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