LXL04_038933 | RubberDandelionOmics

Gene overview

LXL04_038933

Reference: OH-1004 Chr: Chr09 Coordinates: 53589849-53594991 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1275 bp · LXL04_038933|LXL04_038933|OH1004|cDNA

ATGGAAATCGGTGGCAAAACGAACCTTCTTCTTCTATTTGGATGTTTTCTTCTACTGTGTTTGATTGCTTCATCTGATTCATCGCTTCAGTACGACTATTATCGACAATCCTGCCCTGAAGCGCAACAGATTATTAAATCAACTCTACGCCGGATCTACAATCGAAATTCGAGTGCTGCTCCAGCTATTCTTCGCCTGGTTTTTCACGATTGTTTTGTACAGGGATGTGATGCATCAGTGCTTTTGGATCCCACAGAAAT...

CDS

Download CDS FASTA

1275 bp · LXL04_038933|LXL04_038933|OH1004|CDS

ATGGAAATCGGTGGCAAAACGAACCTTCTTCTTCTATTTGGATGTTTTCTTCTACTGTGTTTGATTGCTTCATCTGATTCATCGCTTCAGTACGACTATTATCGACAATCCTGCCCTGAAGCGCAACAGATTATTAAATCAACTCTACGCCGGATCTACAATCGAAATTCGAGTGCTGCTCCAGCTATTCTTCGCCTGGTTTTTCACGATTGTTTTGTACAGGGATGTGATGCATCAGTGCTTTTGGATCCCACAGAAAT...

Protein

Download Protein FASTA

424 aa · LXL04_038933|LXL04_038933|OH1004|PROTEIN

MEIGGKTNLLLLFGCFLLLCLIASSDSSLQYDYYRQSCPEAQQIIKSTLRRIYNRNSSAAPAILRLVFHDCFVQGCDASVLLDPTEIMGSEKDTPPNQSLKGFDHLDIIKAELEHACPGVVSCADLLVVAARESVILAGGPFYPVHTGRKDSKRSFPQLSYELPSPLDDLPTNIARFSTRGFTDKETVTLLGAHSTGMIHCKFFEKRLYNFGGTDHPDPSMDSEFADLLRSICNNNRSHSHSHSHSQSPSASESASPSPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038933`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_038933

Location Chr09:53589849-53594991 (+)

Description Similar to PER48: Putative Peroxidase 48

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33870`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At3g03670`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g17820`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g36430`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038933 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0051707 response to other organism Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0080001 mucilage extrusion from seed coat Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ahf:112743807

ath:AT3G03670

ath:AT4G33870

ath:AT4G36430

ath:AT5G17820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.329

Rank 1 · LXL04_038933 · OH-1004

Extracellular0.200

Rank 2 · LXL04_038933 · OH-1004

Cell membrane0.171

Rank 3 · LXL04_038933 · OH-1004

Endoplasmic reticulum0.154

Rank 4 · LXL04_038933 · OH-1004

Cytoplasm0.138

Rank 5 · LXL04_038933 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase46-318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038933	`PF00141.29`	peroxidase	46	318	7.2e-72	242.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81755`	Arabidopsis thaliana	Putative Peroxidase 48	52.239%	Swiss-Prot	strong database homology
`Q9SS67`	Arabidopsis thaliana	Peroxidase 28	38.576%	Swiss-Prot	moderate database homology
`Q43729`	Arabidopsis thaliana	Peroxidase 57	36.827%	Swiss-Prot	moderate database homology
`O23237`	Arabidopsis thaliana	Peroxidase 49	37.101%	Swiss-Prot	moderate database homology

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