LXL04_033621 | RubberDandelionOmics

Gene overview

LXL04_033621

Reference: OH-1004 Chr: Chr07 Coordinates: 50303679-50305527 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1038 bp · LXL04_033621|LXL04_033621|OH1004|cDNA

ATGGTGCAGGAGGTATTGCCATCGTTGATCATGGTACTTGTGCAATTTGAATTTGCAGGTATGAACATTATCTCCAAGCTTGCATTGGATTCGGGCATGAATCCTTACATCCATGTTGCCTACCGTCAGATGTTTGCTTCTATCACCCTCGGCCCTTTGGCATATTTCATGGAAAGAGGGAAAAGACCTCGAATGACTTGGTCAATTTTTATCCAAGTGTTCTTCTGCTCGATTTTCGGGCTGACAGCGAACCAAATCAC...

CDS

Download CDS FASTA

1038 bp · LXL04_033621|LXL04_033621|OH1004|CDS

ATGGTGCAGGAGGTATTGCCATCGTTGATCATGGTACTTGTGCAATTTGAATTTGCAGGTATGAACATTATCTCCAAGCTTGCATTGGATTCGGGCATGAATCCTTACATCCATGTTGCCTACCGTCAGATGTTTGCTTCTATCACCCTCGGCCCTTTGGCATATTTCATGGAAAGAGGGAAAAGACCTCGAATGACTTGGTCAATTTTTATCCAAGTGTTCTTCTGCTCGATTTTCGGGCTGACAGCGAACCAAATCAC...

Protein

Download Protein FASTA

345 aa · LXL04_033621|LXL04_033621|OH1004|PROTEIN

MVQEVLPSLIMVLVQFEFAGMNIISKLALDSGMNPYIHVAYRQMFASITLGPLAYFMERGKRPRMTWSIFIQVFFCSIFGLTANQITYFVGLKHSTPTIACALSNLLPALTFVLAVIFKQENAKLKTLGGQAKLMGTLIGVGGAMLLSMYHGPVVPIGESGIDVSIGKTTTNDPNGDSEGNLIGPILIIISAFTWAIWFIIQAKMGNMYPAPYSSSALMMAMATVECAVFGLIMEPHLHAWSLNPPIRAVSCVYSGVVCS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033621`
TK1151 ID	TkA08G286260
OH-1004 ID	LXL04_033621
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033621

Location Chr07:50303679-50305527 (+)

Description Similar to At1g09380: WAT1-related protein At1g09380

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09380`	WAT1-related protein At1g09380.	No verified direct reference in this release
`At5g07050`	WAT1-related protein At5g07050.	No verified direct reference in this release
`At2g39510`	WAT1-related protein At2g39510.	No verified direct reference in this release
`At5g13670`	WAT1-related protein At5g13670.	No verified direct reference in this release
`At3g30340`	WAT1-related protein At3g30340.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033621 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0048316 seed development Biological Process

GO:0098712 L-glutamate import across plasma membrane Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015186 L-glutamine transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G09380

ath:AT2G39510

ath:AT3G30340

ath:AT5G07050

ath:AT5G13670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.484

Rank 1 · LXL04_033621 · OH-1004

Lysosome / Vacuole0.194

Rank 2 · LXL04_033621 · OH-1004

Endoplasmic reticulum0.158

Rank 3 · LXL04_033621 · OH-1004

Cytoplasm0.079

Rank 4 · LXL04_033621 · OH-1004

Golgi apparatus0.075

Rank 5 · LXL04_033621 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892.27EamA9-148 aa

PF00892.27EamA183-321 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033621	`PF00892.27`	EamA	9	148	2.1e-30	106.4
LXL04_033621	`PF00892.27`	EamA	183	321	2.1e-30	106.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GXB4`	Arabidopsis thaliana	WAT1-related protein At1g09380	54.180%	Swiss-Prot	strong database homology
`Q9FL41`	Arabidopsis thaliana	WAT1-related protein At5g07050	38.793%	Swiss-Prot	moderate database homology
`O80638`	Arabidopsis thaliana	WAT1-related protein At2g39510	37.313%	Swiss-Prot	moderate database homology
`Q9FNA5`	Arabidopsis thaliana	WAT1-related protein At5g13670	37.425%	Swiss-Prot	moderate database homology
`Q9LI65`	Arabidopsis thaliana	WAT1-related protein At3g30340	33.333%	Swiss-Prot	moderate database homology

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