LXL04_031693 | RubberDandelionOmics

Gene overview

LXL04_031693

Reference: OH-1004 Chr: Chr07 Coordinates: 9575096-9577046 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

933 bp · LXL04_031693|LXL04_031693|OH1004|cDNA

ATGGCGACAAAAAAGATGTTGGAGTGCCACATCATCTCAGCTATTGTAACAGTTGATAGCAAACCAATTGGGATTTTAACATCGAAGGATATATTGATGAGAGTTATATCATTGGGACTTGGTCCTGAGTCAACAATTGTGGAAAAAGTGATGACTCCAAATCCAGAATGTGCCAATATTGATACGCCTATTGTTGATGCCTTGCATACCATGCATCATGGAAAGTTTCTACATCTTCATGTTGTTGATAGAGAGGGACT...

CDS

Download CDS FASTA

933 bp · LXL04_031693|LXL04_031693|OH1004|CDS

ATGGCGACAAAAAAGATGTTGGAGTGCCACATCATCTCAGCTATTGTAACAGTTGATAGCAAACCAATTGGGATTTTAACATCGAAGGATATATTGATGAGAGTTATATCATTGGGACTTGGTCCTGAGTCAACAATTGTGGAAAAAGTGATGACTCCAAATCCAGAATGTGCCAATATTGATACGCCTATTGTTGATGCCTTGCATACCATGCATCATGGAAAGTTTCTACATCTTCATGTTGTTGATAGAGAGGGACT...

Protein

Download Protein FASTA

310 aa · LXL04_031693|LXL04_031693|OH1004|PROTEIN

MATKKMLECHIISAIVTVDSKPIGILTSKDILMRVISLGLGPESTIVEKVMTPNPECANIDTPIVDALHTMHHGKFLHLHVVDREGLVVAIIDVLHISHAAVASVGSTAGIDNEAASTMMQKFWDSAMASAPADDDSDSRRSDDLFNSENSFKLASETEIGKVIQYPSPTLPNTFAFKIQDRKGRMHRFICDTHSLTDLITAIVQRVGGEIDRNNLPQILDMMVAERDAQTQAGETLVDEAEILKNVLGERRGHTKGVGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031693`
TK1151 ID	TkA08G122360
OH-1004 ID	LXL04_031693
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.000
Protein coverage (%)	TK1151 100.000 / OH-1004 45.484 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031693

Location Chr07:9575096-9577046 (+)

Description Similar to CBSCBSPB5: CBS domain-containing protein CBSCBSPB5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50640`	CBS domain-containing protein CBSCBSPB5.	No verified direct reference in this release
`At5g50530`	CBS domain-containing protein CBSCBSPB4.	No verified direct reference in this release
`At5g63490`	CBS domain-containing protein CBSCBSPB1.	No verified direct reference in this release
`At3g52950`	CBS domain-containing protein CBSCBSPB3.	No verified direct reference in this release
`At2g36500`	CBS domain-containing protein CBSCBSPB2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031693 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT5G50530

ath:AT5G50640

ath:AT5G63490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.600

Rank 1 · LXL04_031693 · OH-1004

Cytoplasm0.492

Rank 2 · LXL04_031693 · OH-1004

Cell membrane0.049

Rank 3 · LXL04_031693 · OH-1004

Endoplasmic reticulum0.039

Rank 4 · LXL04_031693 · OH-1004

Mitochondrion0.035

Rank 5 · LXL04_031693 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00571.34CBS47-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031693	`PF00571.34`	CBS	47	99	7.9e-11	42.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0DH79`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB5	54.135%	Swiss-Prot	strong database homology
`Q0WLC7`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB4	54.135%	Swiss-Prot	strong database homology
`Q9FMV3`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB1	59.908%	Swiss-Prot	strong database homology
`Q9LF97`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB3	49.776%	Swiss-Prot	moderate database homology
`Q9SJQ5`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB2	50.962%	Swiss-Prot	moderate database homology

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