LXL04_031363 | RubberDandelionOmics

Gene overview

LXL04_031363

Reference: OH-1004 Chr: Chr07 Coordinates: 5000153-5005586 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2892 bp · LXL04_031363|LXL04_031363|OH1004|cDNA

ATGGAATTGCAGAAGGGATTCATGCTATTGCAACAACAATACAGAGCTTTGTTCAGGAAGAACTTGTTGCTCGCATGGCGGAACAAGAGAGCTACATTCCTTCAATTATTTTCATCGATATTCTTCATATTTTTACTTTTCATTATACAAAAAGCCATTGAAGCTCGGTTCGGTTCTTCGACTGCCTTCCAGACTTTACGAGATCCAGAGCCTCTAATCGATCCTCCGATTCCTCCGTGTGAGGATAAGTACTACGCTAA...

CDS

Download CDS FASTA

2892 bp · LXL04_031363|LXL04_031363|OH1004|CDS

ATGGAATTGCAGAAGGGATTCATGCTATTGCAACAACAATACAGAGCTTTGTTCAGGAAGAACTTGTTGCTCGCATGGCGGAACAAGAGAGCTACATTCCTTCAATTATTTTCATCGATATTCTTCATATTTTTACTTTTCATTATACAAAAAGCCATTGAAGCTCGGTTCGGTTCTTCGACTGCCTTCCAGACTTTACGAGATCCAGAGCCTCTAATCGATCCTCCGATTCCTCCGTGTGAGGATAAGTACTACGCTAA...

Protein

Download Protein FASTA

963 aa · LXL04_031363|LXL04_031363|OH1004|PROTEIN

MELQKGFMLLQQQYRALFRKNLLLAWRNKRATFLQLFSSIFFIFLLFIIQKAIEARFGSSTAFQTLRDPEPLIDPPIPPCEDKYYAKLPCFDFVWSGSDSARIGSIVDQIRANNPGRPIPSTKVKSFRAKGDVDAWLFVNPMSCPGALHFLERNATVISYGIQTNSTPIAKRGDTEDPTFKFQIPLQIAAEREIARSLIGDSGFSWVVNLKEFAHPVVETFSSVGTVGPSFFLAIAMFGFVLQISSLIVEKELKLRQAMA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031363`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031363

Location Chr07:5000153-5005586 (+)

Description Similar to ABCA2: ABC transporter A family member 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47730`	ABC transporter A family member 2.	No verified direct reference in this release
`At5g61690`	ABC transporter A family member 11.	No verified direct reference in this release
`At5g61730`	Mediates the transport of acyl-CoAs and/or free fatty acids to the endoplasmic reticulum.	AtABCA9 transporter supplies fatty acids for lipid synthesis to the endoplasmic reticulum.2013 · DOI: 10.1073/pnas.1214159110
`At3g47780`	ABC transporter A family member 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031363 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006641 triglyceride metabolic process Biological Process

GO:0006869 lipid transport Biological Process

GO:0010867 positive regulation of triglyceride biosynthetic process Biological Process

GO:0034197 triglyceride transport Biological Process

GO:0048316 seed development Biological Process

GO:0048317 seed morphogenesis Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0005319 lipid transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G47730

ath:AT3G47780

ath:AT5G61690

ath:AT5G61730

ddi:DDB_G0291994

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.471

Rank 1 · LXL04_031363 · OH-1004

Lysosome / Vacuole0.265

Rank 2 · LXL04_031363 · OH-1004

Cytoplasm0.195

Rank 3 · LXL04_031363 · OH-1004

Endoplasmic reticulum0.146

Rank 4 · LXL04_031363 · OH-1004

Golgi apparatus0.134

Rank 5 · LXL04_031363 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12698.14ABC2_membrane_3223-438 aa

PF00005.34ABC_tran546-699 aa

PF13304.13AAA_21625-731 aa

PF25158.1ABCA11_C844-898 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031363	`PF12698.14`	ABC2_membrane_3	223	438	4.7e-18	66.1
LXL04_031363	`PF00005.34`	ABC_tran	546	699	1.5e-24	87.9
LXL04_031363	`PF13304.13`	AAA_21	625	731	1.1e-14	55.8
LXL04_031363	`PF25158.1`	ABCA11_C	844	898	8.9e-29	99.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84K47`	Arabidopsis thaliana	ABC transporter A family member 2	69.263%	Swiss-Prot	strong database homology
`Q9FKF2`	Arabidopsis thaliana	ABC transporter A family member 11	65.417%	Swiss-Prot	strong database homology
`Q9FLT5`	Arabidopsis thaliana	ABC transporter A family member 9	64.890%	Swiss-Prot	strong database homology
`Q9STT5`	Arabidopsis thaliana	ABC transporter A family member 7	33.281%	Swiss-Prot	moderate database homology

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