LXL04_031161 | RubberDandelionOmics

Gene overview

LXL04_031161

Reference: OH-1004 Chr: Chr07 Coordinates: 1448423-1449815 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

933 bp · LXL04_031161|LXL04_031161|OH1004|cDNA

ATGGAAGCTGGGGTGAATTTTAGGAACTGGGCAGATCTGTTGCCCGACGCACTTGGTTTAATCTTTAGCCACCTCTCTCTTCAAGAAACTCTCACAGTCGTTCCAAGAGTCTGCAAATCATGGAACCAAGCAGTCCTGGGTCCTTACTGTTGGCAAAACATCAACATTCTTGACTGGAGCTATCGGTCAAACCCTGATCACATTGACCATATGCTCCGACTCCTTGTTACCAGAAGTGGTGGCGCCCTCCGCGAGATCAC...

CDS

Download CDS FASTA

933 bp · LXL04_031161|LXL04_031161|OH1004|CDS

ATGGAAGCTGGGGTGAATTTTAGGAACTGGGCAGATCTGTTGCCCGACGCACTTGGTTTAATCTTTAGCCACCTCTCTCTTCAAGAAACTCTCACAGTCGTTCCAAGAGTCTGCAAATCATGGAACCAAGCAGTCCTGGGTCCTTACTGTTGGCAAAACATCAACATTCTTGACTGGAGCTATCGGTCAAACCCTGATCACATTGACCATATGCTCCGACTCCTTGTTACCAGAAGTGGTGGCGCCCTCCGCGAGATCAC...

Protein

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310 aa · LXL04_031161|LXL04_031161|OH1004|PROTEIN

MEAGVNFRNWADLLPDALGLIFSHLSLQETLTVVPRVCKSWNQAVLGPYCWQNINILDWSYRSNPDHIDHMLRLLVTRSGGALREITVSGILNDLTFSFLADHGRSLQTLQIPRCNISDAIVEQISTKLLAVTFMDLSYCRKISARALSAIGKSCKSLVGFRRNMHPIDIQERRPQAEEAVAIAATMPRLKHLEMAYNCVDTNNVVEIIERCKELEFLDVRGCWDVKLDQDWLDKRVVTITVLGPHVVDQFEGHSCSDYS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031161`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031161

Location Chr07:1448423-1449815 (-)

Description Similar to FBW2: F-box protein FBW2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g08980`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At4g05460`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At4g05500`	Putative F-box/LRR-repeat protein 23.	No verified direct reference in this release
`At5g57900`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At4g05497`	Putative F-box/LRR-repeat protein 9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031161 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010608 post-transcriptional regulation of gene expression Biological Process

GO:0010629 negative regulation of gene expression Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0019005 SCF ubiquitin ligase complex Cellular Component

GO:1905761 SCF ubiquitin ligase complex binding Molecular Function

KEGG gene cross-reference

ath:AT4G05460

ath:AT4G05497

ath:AT4G08980

ath:AT5G57900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.519

Rank 1 · LXL04_031161 · OH-1004

Cytoplasm0.344

Rank 2 · LXL04_031161 · OH-1004

Plastid0.083

Rank 3 · LXL04_031161 · OH-1004

Mitochondrion0.063

Rank 4 · LXL04_031161 · OH-1004

Cell membrane0.062

Rank 5 · LXL04_031161 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937.13F-box-like16-55 aa

PF29594.1LRR_SKP2101-158 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031161	`PF12937.13`	F-box-like	16	55	8e-07	29.4
LXL04_031161	`PF29594.1`	LRR_SKP2	101	158	6.6e-08	32.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZPE4`	Arabidopsis thaliana	F-box protein FBW2	47.115%	Swiss-Prot	moderate database homology
`Q9M0U9`	Arabidopsis thaliana	F-box protein SKIP19	29.078%	Swiss-Prot	weak database homology
`Q9S9V9`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein 23	31.034%	Swiss-Prot	moderate database homology
`Q9FDX1`	Arabidopsis thaliana	F-box protein SKIP1	31.799%	Swiss-Prot	moderate database homology
`Q9S9V8`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein 9	28.571%	Swiss-Prot	weak database homology

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