LXL04_029387 | RubberDandelionOmics

Gene overview

LXL04_029387

Reference: OH-1004 Chr: Chr06 Coordinates: 88843523-88849370 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2394 bp · LXL04_029387|LXL04_029387|OH1004|cDNA

ATGTGTGAAGTATTGTCTCCATTCATTGAAAAAAAAAGATGTGGAGATTAAAGATAGCAGAAGGAGGCAATGATCCATACCTCCACTCCACAAATAACTTCATTGGGAGGCAAATATGGGAGTTTGACTCGAACCATGGCACCCCAGAAGACCGAGCCAAGGCCGAACATGCTCGAATTGATTTCTGGAACCTTAGACATCGGGTCAAACCCAGTAGTGATGTCCTTTGGCGCATGCAGTTTTTAGCAGAGAAACAATTC...

CDS

Download CDS FASTA

2322 bp · LXL04_029387|LXL04_029387|OH1004|CDS

ATGTGGAGATTAAAGATAGCAGAAGGAGGCAATGATCCATACCTCCACTCCACAAATAACTTCATTGGGAGGCAAATATGGGAGTTTGACTCGAACCATGGCACCCCAGAAGACCGAGCCAAGGCCGAACATGCTCGAATTGATTTCTGGAACCTTAGACATCGGGTCAAACCCAGTAGTGATGTCCTTTGGCGCATGCAGTTTTTAGCAGAGAAACAATTCAAAGAGACGATAGCCCAATTTTTAAAAGAGAAACAATT...

Protein

Download Protein FASTA

773 aa · LXL04_029387|LXL04_029387|OH1004|PROTEIN

MWRLKIAEGGNDPYLHSTNNFIGRQIWEFDSNHGTPEDRAKAEHARIDFWNLRHRVKPSSDVLWRMQFLAEKQFKETIAQFLKEKQFKQTIAQVKIEEFEEISYEKATVTLKRCVNLFAALQADDGHWPAENAGPLYFMQPLVICLYITGHLNIVFPQEHRKEILRYMYCHQNEDGGWGFHIEGHSSMFCTTQSYICMRLLGEGVDGGLNGACTKARKWILDHGSVTAIPSWGKTWLSILGVCEWAGTHPMPPEFWILPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029387`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_029387`
Location	Chr06:88843523-88849370 (+)
Description	Similar to OSCPNY2: Beta-amyrin synthase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_029387` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0002238 response to molecule of fungal origin Biological Process GO:0009723 response to ethylene Biological Process GO:0009753 response to jasmonic acid Biological Process GO:0010038 response to metal ion Biological Process GO:0016104 triterpenoid biosynthetic process Biological Process GO:0019745 pentacyclic triterpenoid biosynthetic process Biological Process GO:0042542 response to hydrogen peroxide Biological Process GO:0071731 response to nitric oxide Biological Process GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005811 lipid droplet Cellular Component GO:0016866 intramolecular transferase activity Molecular Function GO:0042300 beta-amyrin synthase activity Molecular Function
KEGG gene cross-reference	ag:BAA33461 ag:BAB83088 sly:100529102 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.387

Rank 1 · LXL04_029387 · OH-1004

Endoplasmic reticulum0.170

Rank 2 · LXL04_029387 · OH-1004

Cytoplasm0.162

Rank 3 · LXL04_029387 · OH-1004

Peroxisome0.120

Rank 4 · LXL04_029387 · OH-1004

Cell membrane0.081

Rank 5 · LXL04_029387 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13249.13SQHop_cyclase_N112-398 aa

PF13243.13SQHop_cyclase_C430-765 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029387	`PF13249.13`	SQHop_cyclase_N	112	398	6.2e-37	128.1
LXL04_029387	`PF13243.13`	SQHop_cyclase_C	430	765	7.8e-53	180.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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