LXL04_029383 | RubberDandelionOmics

Gene overview

LXL04_029383

Reference: OH-1004 Chr: Chr06 Coordinates: 88772473-88775212 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1107 bp · LXL04_029383|LXL04_029383|OH1004|cDNA

ATGAAAGTTCTTAGTTGTCATGTAGAAGTTGAAATGGGAAAACAGAAGTCCGAAGCTGAACCTGATAGTTGTGATTGGCCCGAACCTATTGTTCGTGTTCAATCTTTATCGGAAAGTGGTGAGCTTTTGATTCCCAACCAGTATATCAAGCCACAATCAGAGAGACCGTGTTTATACGTAAAAGAAATGAACATACCCGTGATCGATATGACTGGGTTGGTCATTTCACGTGAAGAGACCATGAAGCAAATTTCAGAGGC...

CDS

Download CDS FASTA

1107 bp · LXL04_029383|LXL04_029383|OH1004|CDS

ATGAAAGTTCTTAGTTGTCATGTAGAAGTTGAAATGGGAAAACAGAAGTCCGAAGCTGAACCTGATAGTTGTGATTGGCCCGAACCTATTGTTCGTGTTCAATCTTTATCGGAAAGTGGTGAGCTTTTGATTCCCAACCAGTATATCAAGCCACAATCAGAGAGACCGTGTTTATACGTAAAAGAAATGAACATACCCGTGATCGATATGACTGGGTTGGTCATTTCACGTGAAGAGACCATGAAGCAAATTTCAGAGGC...

Protein

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368 aa · LXL04_029383|LXL04_029383|OH1004|PROTEIN

MKVLSCHVEVEMGKQKSEAEPDSCDWPEPIVRVQSLSESGELLIPNQYIKPQSERPCLYVKEMNIPVIDMTGLVISREETMKQISEACRKWGFFQLVNHGVWTELVDRVRENWRKFFHERKEVKEKYANTPKTYEGYGSRLGVEKGAILDWSDYYYLNYLPHSHTKWPAHPPSLREVMEEYTKEILRLGEVLLKVFSLNLGVKEDTLQNAFGGAKDVGACLRANFYPKCPQPDLTLGLSSHSDPGGMTFLLPDEQVFGLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029383`
TK1151 ID	TkA07G308640
OH-1004 ID	LXL04_029383
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 51.902 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029383

Location Chr06:88772473-88775212 (-)

Description Similar to At5g05600: Probable 2-oxoglutarate-dependent dioxygenase At5g05600

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05600`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	Detoxification of polycyclic aromatic hydrocarbons (PAHs) in Arabidopsis thaliana involves a putative flavonol synthase.2017 · DOI: 10.1016/j.jhazmat.2016.08.058
`At3g11180`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	No verified direct reference in this release
`At3g55970`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	No verified direct reference in this release
`At2g38240`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0536400`	Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R- dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants.	Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.2008 · DOI: 10.1016/s1016-8478(23)17587-x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029383 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006952 defense response Biological Process

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0097237 cellular response to toxic substance Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900366 negative regulation of defense response to insect Biological Process

GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005506 iron ion binding Molecular Function

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0031418 L-ascorbic acid binding Molecular Function

KEGG gene cross-reference

ath:AT2G38240

ath:AT3G11180

ath:AT3G55970

ath:AT5G05600

dosa:Os10g0536400

osa:4349238

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.729

Rank 1 · LXL04_029383 · OH-1004

Nucleus0.323

Rank 2 · LXL04_029383 · OH-1004

Peroxisome0.086

Rank 3 · LXL04_029383 · OH-1004

Mitochondrion0.075

Rank 4 · LXL04_029383 · OH-1004

Cell membrane0.046

Rank 5 · LXL04_029383 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N65-171 aa

PF03171.272OG-FeII_Oxy219-317 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029383	`PF14226.13`	DIOX_N	65	171	2.7e-28	99.7
LXL04_029383	`PF03171.27`	2OG-FeII_Oxy	219	317	1.3e-32	112.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FFF6`	Arabidopsis thaliana	Jasmonate-induced oxygenase 2	60.165%	Swiss-Prot	strong database homology
`Q9SRM3`	Arabidopsis thaliana	Jasmonate-induced oxygenase 1	59.773%	Swiss-Prot	strong database homology
`Q9LY48`	Arabidopsis thaliana	Jasmonate-induced oxygenase 3	57.263%	Swiss-Prot	strong database homology
`O80449`	Arabidopsis thaliana	Jasmonate-induced oxygenase 4	57.225%	Swiss-Prot	strong database homology
`Q8W2X5`	Oryza sativa subsp. japonica	Flavanone 3-dioxygenase 2	38.679%	Swiss-Prot	moderate database homology

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