LXL04_029071 | RubberDandelionOmics

Gene overview

LXL04_029071

Reference: OH-1004 Chr: Chr06 Coordinates: 79962938-79968075 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2916 bp · LXL04_029071|LXL04_029071|OH1004|cDNA

ATGAGAGTTCCAGAACTACTCGGTGCTTTTGTTCGGAAATTACTACGTGTTCCATACTATCTGATCACTGCAATTATTCTTTTGTTCAATGAACTTGCTAAGCTTTCTTCTATCCTGAACCCTTTCAACACCAACAAACCTAAAATGGGTCGGGGGAACATCTACAAGAGAAGAATGAAGGTTTTCTCATTGGCATTTATCATCTACCTGGATTACAAGGCATTACAGCAGAGGGAGAAATTGGCAAAAAGATCTAAACG...

CDS

Download CDS FASTA

2916 bp · LXL04_029071|LXL04_029071|OH1004|CDS

ATGAGAGTTCCAGAACTACTCGGTGCTTTTGTTCGGAAATTACTACGTGTTCCATACTATCTGATCACTGCAATTATTCTTTTGTTCAATGAACTTGCTAAGCTTTCTTCTATCCTGAACCCTTTCAACACCAACAAACCTAAAATGGGTCGGGGGAACATCTACAAGAGAAGAATGAAGGTTTTCTCATTGGCATTTATCATCTACCTGGATTACAAGGCATTACAGCAGAGGGAGAAATTGGCAAAAAGATCTAAACG...

Protein

Download Protein FASTA

971 aa · LXL04_029071|LXL04_029071|OH1004|PROTEIN

MRVPELLGAFVRKLLRVPYYLITAIILLFNELAKLSSILNPFNTNKPKMGRGNIYKRRMKVFSLAFIIYLDYKALQQREKLAKRSKRDALWDKAHERNAKRVLKLIVELEGLWVKMGQYLSTRADVLPDAYIRLLKQLQDSLPPRPFEEVRETIEKQLGQSMDELFTNFVSVPLATASIAQVHRATLHDGQEVVVKVQHEGIKTIILEDLKNAKSIVDWIAWAEPQYDFNPMIDEWCKEAPKELDFNHEAENTRKVSRNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029071`
TK1151 ID	TkA07G269750
OH-1004 ID	LXL04_029071
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029071

Location Chr06:79962938-79968075 (-)

Description Similar to sll1770: Uncharacterized protein sll1770 (Synechocystis sp. (strain PCC 6803 / Kazusa)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64940`	May participate in responses to oxidative stress, high light and heavy metals.	Loss of the Atypical Kinases ABC1K7 and ABC1K8 Changes the Lipid Composition of the Chloroplast Membrane.2015 · DOI: 10.1093/pcp/pcv046

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029071 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010637 negative regulation of mitochondrial fusion Biological Process

GO:0034599 cellular response to oxidative stress Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046467 membrane lipid biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0055088 lipid homeostasis Biological Process

GO:1901031 regulation of response to reactive oxygen species Biological Process

KEGG gene cross-reference

ath:AT5G64940

gga:423382

hsa:57143

syn:sll1770

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.278

Rank 1 · LXL04_029071 · OH-1004

Peroxisome0.185

Rank 2 · LXL04_029071 · OH-1004

Mitochondrion0.182

Rank 3 · LXL04_029071 · OH-1004

Cytoplasm0.167

Rank 4 · LXL04_029071 · OH-1004

Endoplasmic reticulum0.137

Rank 5 · LXL04_029071 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03109.23ABC1137-386 aa

PF00144.30Beta-lactamase528-823 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029071	`PF03109.23`	ABC1	137	386	2.7e-67	227.2
LXL04_029071	`PF00144.30`	Beta-lactamase	528	823	1.5e-48	166.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93Y08`	Arabidopsis thaliana	Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic	34.139%	Swiss-Prot	weak database homology

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