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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_026821
Reference: OH-1004 Chr: Chr06 Coordinates: 3405677-3407030 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1194 bp · LXL04_026821|LXL04_026821|OH1004|cDNA

ATGCTAGCTTTCTCCAACCATAACTTCACTCAAATATGCAAAATTCAAGCCTTCCTTTCTTCCCATTCATTGAAACAACATTCATTTACAAAATCAAACCTTCTAAAACCCCAAAATTTCCGGGTGGTATGTGCCGTCGGCGACCTAGGGCAAATGCAGAAAGTCGAAGACGAGAGACCGAAGATTAGGTGGGTTGAAATCAACCTTGCTGAAATCAACGAGGCGCAAAGGAATCATATATCTCGATTGCCGAAAGACAT...

CDS

Download CDS FASTA

1194 bp · LXL04_026821|LXL04_026821|OH1004|CDS

ATGCTAGCTTTCTCCAACCATAACTTCACTCAAATATGCAAAATTCAAGCCTTCCTTTCTTCCCATTCATTGAAACAACATTCATTTACAAAATCAAACCTTCTAAAACCCCAAAATTTCCGGGTGGTATGTGCCGTCGGCGACCTAGGGCAAATGCAGAAAGTCGAAGACGAGAGACCGAAGATTAGGTGGGTTGAAATCAACCTTGCTGAAATCAACGAGGCGCAAAGGAATCATATATCTCGATTGCCGAAAGACAT...

Protein

Download Protein FASTA

397 aa · LXL04_026821|LXL04_026821|OH1004|PROTEIN

MLAFSNHNFTQICKIQAFLSSHSLKQHSFTKSNLLKPQNFRVVCAVGDLGQMQKVEDERPKIRWVEINLAEINEAQRNHISRLPKDMTNRCRALMKQLICFSPEKTSLSVLLAAWVRSMKPVRADWLVVLKELENMNHPLRLEVAELALLEESFEPNIRDYTKIIHGYAKQSRIQEAENTLQAMKNQGLECDQVTLTSLIHMYSKSGNFNLAKDTFEKMKLLPLPLDNRAYGSMVMAYIRAGMLQEGEALLQEMESQQVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_026821
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_026821
LocationChr06:3405677-3407030 (+)
DescriptionSimilar to At1g01970: Pentatricopeptide repeat-containing protein At1g01970
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g01970 Pentatricopeptide repeat-containing protein At1g01970. No verified direct reference in this release
At1g19525 Pentatricopeptide repeat-containing protein At1g19525. No verified direct reference in this release
At5g04810 May play a role in the plastid ribosome biogenesis. No verified direct reference in this release
At1g09820 Pentatricopeptide repeat-containing protein At1g09820. No verified direct reference in this release
At5g39980 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026821 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0008380 RNA splicing Biological Process
GO:0009880 embryonic pattern specification Biological Process
GO:0048366 leaf development Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G01970
ath:AT5G04810
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.811
Rank 1 · LXL04_026821 · OH-1004
Mitochondrion0.143
Rank 2 · LXL04_026821 · OH-1004
Nucleus0.045
Rank 3 · LXL04_026821 · OH-1004
Cytoplasm0.018
Rank 4 · LXL04_026821 · OH-1004
Cell membrane0.008
Rank 5 · LXL04_026821 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N149-277 aa
PF13812.13PPR_3153-189 aa
PF13041.13PPR_2156-201 aa
PF17177.11PPR_long172-279 aa
PF13812.13PPR_3181-220 aa
PF12854.14PPR_1188-220 aa
PF13041.13PPR_2192-234 aa
PF01535.27PPR194-220 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_026821PF29070.1MSC6_N1492779.6e-0832.2
LXL04_026821PF13812.13PPR_31531892.2e-1660.4
LXL04_026821PF13041.13PPR_21562019.5e-2484.0
LXL04_026821PF17177.11PPR_long1722798.6e-1142.3
LXL04_026821PF13812.13PPR_31812202.2e-1660.4
LXL04_026821PF12854.14PPR_11882201.3e-1454.4
LXL04_026821PF13041.13PPR_21922349.5e-2484.0
LXL04_026821PF01535.27PPR1942204.7e-2793.0
LXL04_026821PF01535.27PPR2302574.7e-2793.0
LXL04_026821PF13041.13PPR_22963419.5e-2484.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LPC4Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g0197053.213%Swiss-Protstrong database homology
Q940Z1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1952540.191%Swiss-Protmoderate database homology
Q0WMY5Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g04810, chloroplastic25.194%Swiss-Protweak database homology
O04504Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g0982021.607%Swiss-Protweak database homology
Q9FLD8Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g39980, chloroplastic23.577%Swiss-Protweak database homology

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