Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1849 bp · LXL04_026120|LXL04_026120|OH1004|cDNA
ATGGACCCACCAAAAGCAGTGTCAGTAGAATCCAAACCCAAACCCGGCGACCAAACCACCGACTCAAAACCCAAATCCTACGAATGCGGACTGTGCGACACCGAAGTGGTCTACAAAATCGCGCAAGAGCTCCTCCCGGGACTCGCCTCCGCCTGTGTGGACAACACAACCGGCGGCCTCTTCAAAAACGCGGGGTCCGTAGCCGTCGACATGCGCAAAGAAATGTCCGACTACCTCATCAACCGTAGCGAAACCTACGT...
1821 bp · LXL04_026120|LXL04_026120|OH1004|CDS
ATGGACCCACCAAAAGCAGTGTCAGTAGAATCCAAACCCAAACCCGGCGACCAAACCACCGACTCAAAACCCAAATCCTACGAATGCGGACTGTGCGACACCGAAGTGGTCTACAAAATCGCGCAAGAGCTCCTCCCGGGACTCGCCTCCGCCTGTGTGGACAACACAACCGGCGGCCTCTTCAAAAACGCGGGGTCCGTAGCCGTCGACATGCGCAAAGAAATGTCCGACTACCTCATCAACCGTAGCGAAACCTACGT...
Protein
Download Protein FASTA606 aa · LXL04_026120|LXL04_026120|OH1004|PROTEIN
MDPPKAVSVESKPKPGDQTTDSKPKSYECGLCDTEVVYKIAQELLPGLASACVDNTTGGLFKNAGSVAVDMRKEMSDYLINRSETYVAEFLLSESSPVLEASEHPYDIIIILIDDFTASKRNMLSRVSEWVFSDGREDRIDDFVQEMEVNGFWVLARRESVASNLLKNVDYKNSFHCNIVCESEEEVGKHRVACKFRVMDCVNEGCTIRYCAAQKENHEAVCPFMILPCEQKCADFVMRREMDRHCVTVCPMKLVNCAFY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_026120 |
|---|---|
| TK1151 ID | TkAUNG090200 |
| OH-1004 ID | LXL04_026120 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 98.500 |
| Protein coverage (%) | TK1151 89.446 / OH-1004 55.941Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_026120 |
|---|---|
| Location | Chr05:121240259-121242416 (-) |
| Description | Protein of unknown function |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0009615 response to virus Biological Process GO:0009617 response to bacterium Biological Process GO:0031663 lipopolysaccharide-mediated signaling pathway Biological Process GO:0038061 non-canonical NF-kappaB signal transduction Biological Process GO:0043122 regulation of canonical NF-kappaB signal transduction Biological Process GO:0045087 innate immune response Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0070534 protein K63-linked ubiquitination Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005811 lipid droplet Cellular Component GO:0005938 cell cortex Cellular Component |
| KEGG gene cross-reference | ddi:DDB_G0290931 ddi:DDB_G0290965 dre:554561 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02176.25zf-TRAF218-276 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_026120 | PF02176.25 | zf-TRAF | 218 | 276 | 1.5e-10 | 42.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.