Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1200 bp · LXL04_024044|LXL04_024044|OH1004|cDNA
ATGAAGGTGGTTAAATTCAATTTGCTTCTGTACGTAGCATTTATTTCTTGTATATTTATCATGGCGGCTCAATTTACATTTTCAAGTCCGATTTCGAAGAGCAATAGGCGGGAGCTGAGGAAGAAGCACGACGGGCCATGCGAGGCCCATAACTCCATTGACAAGTGCTGGCGATGTGATCCCAATTGGGCAGAAAACCGGGAAAAGCTTGCCGACTGTGTTCAAGGTTTTGGCCACAACACCACCGGCGGTAAAGGTGG...
1200 bp · LXL04_024044|LXL04_024044|OH1004|CDS
ATGAAGGTGGTTAAATTCAATTTGCTTCTGTACGTAGCATTTATTTCTTGTATATTTATCATGGCGGCTCAATTTACATTTTCAAGTCCGATTTCGAAGAGCAATAGGCGGGAGCTGAGGAAGAAGCACGACGGGCCATGCGAGGCCCATAACTCCATTGACAAGTGCTGGCGATGTGATCCCAATTGGGCAGAAAACCGGGAAAAGCTTGCCGACTGTGTTCAAGGTTTTGGCCACAACACCACCGGCGGTAAAGGTGG...
Protein
Download Protein FASTA399 aa · LXL04_024044|LXL04_024044|OH1004|PROTEIN
MKVVKFNLLLYVAFISCIFIMAAQFTFSSPISKSNRRELRKKHDGPCEAHNSIDKCWRCDPNWAENREKLADCVQGFGHNTTGGKGGEVYVVNDSSDTDLVNPKVGTLRHAVLQPEPLWIIFRSTMTIRLCQELIIAGNKTIDGRGAHVHIAGGAGFMLQFVKNVIISDLHMYDITPGDGGIIRSNSTHFGHRGASDGDAITIFGSSDIWVDHCSFAGTFDGLIDIVARSTDITISNCHFVRHDKALLFGASDIHPDENM...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_024044 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_024044 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr05:78557821-78559169 (-) | ||||||
| Description | Similar to Pectate lyase | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0045490 pectin catabolic process Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0030570 pectate lyase activity Molecular Function GO:0046872 metal ion binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT3G01270 nta:107804209 sly:101253756 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00544.26Pectate_lyase_4136-328 aaPF13229.13Beta_helix140-244 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_024044 | PF00544.26 | Pectate_lyase_4 | 136 | 328 | 2.1e-20 | 73.8 |
| LXL04_024044 | PF13229.13 | Beta_helix | 140 | 244 | 6.8e-06 | 26.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q9SRH4 | Arabidopsis thaliana | Probable pectate lyase 7 | 52.972% | Swiss-Prot | strong database homology |