LXL04_023001 | RubberDandelionOmics

Gene overview

LXL04_023001

Reference: OH-1004 Chr: Chr05 Coordinates: 16958279-16962875 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1965 bp · LXL04_023001|LXL04_023001|OH1004|cDNA

ATGAGGAGGTGTTGGAAAAGGTGCTTGGGGATGGAAAAAAATACTATGTTTTGGACGGATGTGTGGGGTGGTGAAAGGTCTTTAGCGGCTCGGTTCCCCAAGTTGATGAGGAGAGATAGTGCTCCTGATTGTCTTGGGTGGCAGTTCTCTTGGTCGCGCCCTATTACGGGTGGAGTGGCGACAGGTCAGTTTAAGGTGTTGGTTGAGTTGTTGCAGGTTGTGCGGTGTTCGGATGCTCGAGACAGTTGGAGGTGGAAGCT...

CDS

Download CDS FASTA

1965 bp · LXL04_023001|LXL04_023001|OH1004|CDS

ATGAGGAGGTGTTGGAAAAGGTGCTTGGGGATGGAAAAAAATACTATGTTTTGGACGGATGTGTGGGGTGGTGAAAGGTCTTTAGCGGCTCGGTTCCCCAAGTTGATGAGGAGAGATAGTGCTCCTGATTGTCTTGGGTGGCAGTTCTCTTGGTCGCGCCCTATTACGGGTGGAGTGGCGACAGGTCAGTTTAAGGTGTTGGTTGAGTTGTTGCAGGTTGTGCGGTGTTCGGATGCTCGAGACAGTTGGAGGTGGAAGCT...

Protein

Download Protein FASTA

654 aa · LXL04_023001|LXL04_023001|OH1004|PROTEIN

MRRCWKRCLGMEKNTMFWTDVWGGERSLAARFPKLMRRDSAPDCLGWQFSWSRPITGGVATGQFKVLVELLQVVRCSDARDSWRWKLDVDGMFSVAATRDWIDRQVLKSNHFKTRWCKFIPRKVNIFIWRVSWRRLPTRVALKAKGVDLDSVDCPICNDGEEDLQHLFFRCSVASALWCRIFRWLEVQPYEGADPVEVLRWCDKSRMGANARLVLEVVCSSTLWVIWRYRNDVVHETGSLRICLLFDYIREISYLWFSSR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023001`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_023001

Location Chr05:16958279-16962875 (+)

Description Similar to At1g06620: 1-aminocyclopropane-1-carboxylate oxidase homolog 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06620`	1-aminocyclopropane-1-carboxylate oxidase homolog 1.	No verified direct reference in this release
`At1g06650`	1-aminocyclopropane-1-carboxylate oxidase homolog 3.	No verified direct reference in this release
`At5g59540`	1-aminocyclopropane-1-carboxylate oxidase homolog 12.	No verified direct reference in this release
`At5g59530`	1-aminocyclopropane-1-carboxylate oxidase homolog 11.	No verified direct reference in this release
`At1g06640`	1-aminocyclopropane-1-carboxylate oxidase homolog 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023001 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009620 response to fungus Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0016629 12-oxophytodienoate reductase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0051213 dioxygenase activity Molecular Function

KEGG gene cross-reference

ath:AT1G06620

ath:AT1G06640

ath:AT1G06650

ath:AT5G59530

ath:AT5G59540

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.704

Rank 1 · LXL04_023001 · OH-1004

Nucleus0.355

Rank 2 · LXL04_023001 · OH-1004

Cell membrane0.080

Rank 3 · LXL04_023001 · OH-1004

Endoplasmic reticulum0.063

Rank 4 · LXL04_023001 · OH-1004

Peroxisome0.035

Rank 5 · LXL04_023001 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966.12zf-RVT93-178 aa

PF14226.13DIOX_N364-457 aa

PF03171.272OG-FeII_Oxy515-600 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023001	`PF13966.12`	zf-RVT	93	178	5e-17	63.0
LXL04_023001	`PF14226.13`	DIOX_N	364	457	8e-18	65.9
LXL04_023001	`PF03171.27`	2OG-FeII_Oxy	515	600	9.5e-24	84.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84MB3`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 1	54.670%	Swiss-Prot	moderate database homology
`Q8H1S4`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 3	52.500%	Swiss-Prot	moderate database homology
`Q9LTH7`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 12	53.107%	Swiss-Prot	moderate database homology
`Q9LTH8`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 11	52.941%	Swiss-Prot	moderate database homology
`Q9C5K7`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 2	50.959%	Swiss-Prot	moderate database homology

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