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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_021796
Reference: OH-1004 Chr: Chr04 Coordinates: 137042643-137048785 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4740 bp · LXL04_021796|LXL04_021796|OH1004|cDNA

ATGGGGAATCTGAGGGGTTTTGGGATCCATCTGATATTTGTATTTGCTTTTCTGGTTGCAGCCACATGTACGAGGGTTTTGGGTGATCAAAATACCAGTGAGCAAGTGAAAGAGCGACTTGCTCTTCTCAAGTTCAAACACAGTGTCAAAGATTCTTATGACATGTTGTCATCATGGGTTGGCAATGACTGTTGTATGTGGGAAGGAATCCACTGTGATGCTATCACCCGAAATGTGGAAAGCCTCCATCTTAGAGGTAA...

CDS

Download CDS FASTA

4740 bp · LXL04_021796|LXL04_021796|OH1004|CDS

ATGGGGAATCTGAGGGGTTTTGGGATCCATCTGATATTTGTATTTGCTTTTCTGGTTGCAGCCACATGTACGAGGGTTTTGGGTGATCAAAATACCAGTGAGCAAGTGAAAGAGCGACTTGCTCTTCTCAAGTTCAAACACAGTGTCAAAGATTCTTATGACATGTTGTCATCATGGGTTGGCAATGACTGTTGTATGTGGGAAGGAATCCACTGTGATGCTATCACCCGAAATGTGGAAAGCCTCCATCTTAGAGGTAA...

Protein

Download Protein FASTA

1579 aa · LXL04_021796|LXL04_021796|OH1004|PROTEIN

MGNLRGFGIHLIFVFAFLVAATCTRVLGDQNTSEQVKERLALLKFKHSVKDSYDMLSSWVGNDCCMWEGIHCDAITRNVESLHLRGNFQIQDEFVERSFFLRGYEVSSSLAELKHLKHLDLSGNYFYGSHIPKFIGSFKQLTYLNLSYSYFQGNISHHLGNLTNLKVLDLSSSERGLMVDDMAWISGLSSLELLDLSYVDLSRARNRGMVFYMIPSLQVLGLSNCGLSNADLIPFRNSSRILPNIKHLDLGINSFQGPLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_021796
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_021796
LocationChr04:137042643-137048785 (-)
DescriptionSimilar to EIX2: Receptor-like protein EIX2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g15080 Receptor-like protein 19. No verified direct reference in this release
At3g11010 Receptor-like protein 34. No verified direct reference in this release
At4g13920 Receptor-like protein 50. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021796 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.848
Rank 1 · LXL04_021796 · OH-1004
Endoplasmic reticulum0.085
Rank 2 · LXL04_021796 · OH-1004
Cytoplasm0.061
Rank 3 · LXL04_021796 · OH-1004
Lysosome / Vacuole0.039
Rank 4 · LXL04_021796 · OH-1004
Nucleus0.031
Rank 5 · LXL04_021796 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_238-73 aa
PF23598.2LRR_14105-276 aa
PF13855.13LRR_8293-357 aa
PF13855.13LRR_8364-401 aa
PF13855.13LRR_8421-477 aa
PF23598.2LRR_14428-508 aa
PF23598.2LRR_14503-590 aa
PF13855.13LRR_8609-668 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_021796PF08263.18LRRNT_238731.7e-0938.5
LXL04_021796PF23598.2LRR_141052768.8e-52176.7
LXL04_021796PF13855.13LRR_82933574.5e-84276.9
LXL04_021796PF13855.13LRR_83644014.5e-84276.9
LXL04_021796PF13855.13LRR_84214774.5e-84276.9
LXL04_021796PF23598.2LRR_144285088.8e-52176.7
LXL04_021796PF23598.2LRR_145035908.8e-52176.7
LXL04_021796PF13855.13LRR_86096684.5e-84276.9
LXL04_021796PF13855.13LRR_87357924.5e-84276.9
LXL04_021796PF23598.2LRR_147538398.8e-52176.7
LXL04_021796PF23598.2LRR_149119738.8e-52176.7
LXL04_021796PF12799.14LRR_49169501.6e-59197.2
LXL04_021796PF13855.13LRR_89199744.5e-84276.9
LXL04_021796PF13855.13LRR_8110911664.5e-84276.9
LXL04_021796PF13855.13LRR_8115612154.5e-84276.9
LXL04_021796PF23598.2LRR_14129013608.8e-52176.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUK3Arabidopsis thalianaReceptor-like protein 1932.874%Swiss-Protmoderate database homology
Q9SRL2Arabidopsis thalianaReceptor-like protein 3433.101%Swiss-Protmoderate database homology
Q93YT3Arabidopsis thalianaReceptor-like protein 5033.111%Swiss-Protweak database homology

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