LXL04_021784 | RubberDandelionOmics

Gene overview

LXL04_021784

Reference: OH-1004 Chr: Chr04 Coordinates: 136954569-136961406 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1563 bp · LXL04_021784|LXL04_021784|OH1004|cDNA

ATGAAAACACTTTCTTCTTCATTGGTTATTGATCTTCTTACTCATGTGGTGATCCCCGTAATTACCATTATAACCTTCTACTACTTAAATATCCTATGGATGAAACCTCAAAGATTAAGAAGAAAGCTCGAAAAGCAAGGAATCAGAGGGCCAAAACCGTCTTTTCCATATGGGAATGTGGTTGAGATGCAGAAGATTCAAGCGGCGACGATCGCCATGAATGTTTCAAGGTCAAGCGGTGGAGATTTTGTTGGTGATGA...

CDS

Download CDS FASTA

1563 bp · LXL04_021784|LXL04_021784|OH1004|CDS

ATGAAAACACTTTCTTCTTCATTGGTTATTGATCTTCTTACTCATGTGGTGATCCCCGTAATTACCATTATAACCTTCTACTACTTAAATATCCTATGGATGAAACCTCAAAGATTAAGAAGAAAGCTCGAAAAGCAAGGAATCAGAGGGCCAAAACCGTCTTTTCCATATGGGAATGTGGTTGAGATGCAGAAGATTCAAGCGGCGACGATCGCCATGAATGTTTCAAGGTCAAGCGGTGGAGATTTTGTTGGTGATGA...

Protein

Download Protein FASTA

520 aa · LXL04_021784|LXL04_021784|OH1004|PROTEIN

MKTLSSSLVIDLLTHVVIPVITIITFYYLNILWMKPQRLRRKLEKQGIRGPKPSFPYGNVVEMQKIQAATIAMNVSRSSGGDFVGDDYTCTLFPYFEQWRKQYGSIYTYSTGNKQHLYINDPELVKEMNQSITLGLGKPSYVTKRLSPLLGNGILRSNGHFWVHQRKIIAPEFFMDKVKGMVGLMSESVEPLLKKWEAFIEGQGGQRADIRVDDDLRAVSADVISRACFGSSYAKGKEIFSKLKTLQKTISSKGMLFGLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021784`
TK1151 ID	TkA05G420980
OH-1004 ID	LXL04_021784
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021784

Location Chr04:136954569-136961406 (+)

Description Similar to CYP714A1: Cytochrome P450 714A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24910`	Involved in the inactivation of early gibberellin (GA) intermediates.	Two Arabidopsis cytochrome P450 monooxygenases, CYP714A1 and CYP714A2, function redundantly in plant development through gibberellin deactivation.2011 · DOI: 10.1111/j.1365-313x.2011.04596.x
`At5g24900`	Involved in the inactivation of early gibberellin (GA) intermediates.	Two Arabidopsis cytochrome P450 monooxygenases, CYP714A1 and CYP714A2, function redundantly in plant development through gibberellin deactivation.2011 · DOI: 10.1111/j.1365-313x.2011.04596.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0119000`	Probably not involved in gibberellin metabolism since over-expression of CYP714C2 in a heterologous system does not induce semi-dwarfism.	No verified direct reference in this release
`Os11g0119311`	Cytochrome P450 714C3.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021784 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006629 lipid metabolic process Biological Process

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ath:AT5G24900

ath:AT5G24910

dosa:Os12g0119000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.854

Rank 1 · LXL04_021784 · OH-1004

Cytoplasm0.052

Rank 2 · LXL04_021784 · OH-1004

Cell membrane0.045

Rank 3 · LXL04_021784 · OH-1004

Plastid0.041

Rank 4 · LXL04_021784 · OH-1004

Golgi apparatus0.039

Rank 5 · LXL04_021784 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45094-504 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021784	`PF00067.28`	p450	94	504	4.9e-71	240.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Z79`	Arabidopsis thaliana	Cytochrome P450 714A1	59.339%	Swiss-Prot	strong database homology
`Q6NKZ8`	Arabidopsis thaliana	Cytochrome P450 714A2	55.804%	Swiss-Prot	strong database homology
`Q2QYH7`	Oryza sativa subsp. japonica	Cytochrome P450 714C2	49.049%	Swiss-Prot	moderate database homology
`B9G934`	Oryza sativa subsp. japonica	Cytochrome P450 714C3	45.224%	Swiss-Prot	moderate database homology

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