LXL04_014891 | RubberDandelionOmics

Gene overview

LXL04_014891

Reference: OH-1004 Chr: Chr03 Coordinates: 59136795-59139768 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1338 bp · LXL04_014891|LXL04_014891|OH1004|cDNA

ATGGCTACCATCAAGTCAGTAAAAGCACGACAGATCTTTGACAGCAGAGGCAATCCAACCGTTGAGGTTGATATTATTCTTTCCGATGGCACATTGGCCCGAGCTGCCGTACCCAGCGGTGCATCCACCGGTATTTACGAGGCCCTTGAATTAAGAGATGGAGGTTCAGACTACCTTGGAAAAGGTGTCTCCAAGGCTGTTGCAAATGTTAACGACATTATCGGCCCTGCTCTTGTTGGCAAGGACCCAACTGATCAGAC...

CDS

Download CDS FASTA

1338 bp · LXL04_014891|LXL04_014891|OH1004|CDS

ATGGCTACCATCAAGTCAGTAAAAGCACGACAGATCTTTGACAGCAGAGGCAATCCAACCGTTGAGGTTGATATTATTCTTTCCGATGGCACATTGGCCCGAGCTGCCGTACCCAGCGGTGCATCCACCGGTATTTACGAGGCCCTTGAATTAAGAGATGGAGGTTCAGACTACCTTGGAAAAGGTGTCTCCAAGGCTGTTGCAAATGTTAACGACATTATCGGCCCTGCTCTTGTTGGCAAGGACCCAACTGATCAGAC...

Protein

Download Protein FASTA

445 aa · LXL04_014891|LXL04_014891|OH1004|PROTEIN

MATIKSVKARQIFDSRGNPTVEVDIILSDGTLARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVANVNDIIGPALVGKDPTDQTGIDNYMVQQLDGTQNEWGWCKQKLGANAILAVSLALCKAGAAVLKIPLYKHIANLAGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKIAIANAGYTGKVVIGMDVAASEFYAEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014891`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014891

Location Chr03:59136795-59139768 (-)

Description Similar to Enolase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0167300`	Enolase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014891 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0000015 phosphopyruvate hydratase complex Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004634 phosphopyruvate hydratase activity Molecular Function

KEGG gene cross-reference

dosa:Os10g0167300

rcu:8288376

sly:544068

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.741

Rank 1 · LXL04_014891 · OH-1004

Nucleus0.255

Rank 2 · LXL04_014891 · OH-1004

Mitochondrion0.137

Rank 3 · LXL04_014891 · OH-1004

Cell membrane0.117

Rank 4 · LXL04_014891 · OH-1004

Endoplasmic reticulum0.081

Rank 5 · LXL04_014891 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03952.22Enolase_N4-139 aa

PF00113.29Enolase_C148-441 aa

PF13378.13MR_MLE_C288-405 aa

PF07476.18MAAL_C299-402 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014891	`PF03952.22`	Enolase_N	4	139	1.3e-53	181.3
LXL04_014891	`PF00113.29`	Enolase_C	148	441	2.5e-158	526.8
LXL04_014891	`PF13378.13`	MR_MLE_C	288	405	2.9e-08	34.4
LXL04_014891	`PF07476.18`	MAAL_C	299	402	8.7e-07	29.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q42971`	Oryza sativa subsp. japonica	Enolase	88.739%	Swiss-Prot	strong database homology

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