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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_008488
Reference: OH-1004 Chr: Chr02 Coordinates: 101024433-101026475 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1929 bp · LXL04_008488|LXL04_008488|OH1004|cDNA

ATGGGAAAGACGACGAACATGTCAATTGGTTTGCGACGGTCGATCTCCACTATTCCTTTTCTCTCCGACAGAATCAAGCAAACAGAAAGTGAAATTGTTCAAATGTTCCAGTTGTCGCGTCCAAGAGAAGATACAAGGAATCTACCCATCAATCAAAGAACATCAAGAAAGACCTCTGCACGGATGCTGGACGAGAGATTTATCAGGATTTTGAAGATATTCAAGTGGGGTCCTGATGCAGAAAAGGCTTTAGAAGTACT...

CDS

Download CDS FASTA

1929 bp · LXL04_008488|LXL04_008488|OH1004|CDS

ATGGGAAAGACGACGAACATGTCAATTGGTTTGCGACGGTCGATCTCCACTATTCCTTTTCTCTCCGACAGAATCAAGCAAACAGAAAGTGAAATTGTTCAAATGTTCCAGTTGTCGCGTCCAAGAGAAGATACAAGGAATCTACCCATCAATCAAAGAACATCAAGAAAGACCTCTGCACGGATGCTGGACGAGAGATTTATCAGGATTTTGAAGATATTCAAGTGGGGTCCTGATGCAGAAAAGGCTTTAGAAGTACT...

Protein

Download Protein FASTA

642 aa · LXL04_008488|LXL04_008488|OH1004|PROTEIN

MGKTTNMSIGLRRSISTIPFLSDRIKQTESEIVQMFQLSRPREDTRNLPINQRTSRKTSARMLDERFIRILKIFKWGPDAEKALEVLKLRVDHRLVREVLNIDVHVNVKIQFFKWAGKRRHFEHDSTTYMALISCLSDSEMFGEMWKTIQEMVRHSVIIDPKDLSDIVRLLGKAKMVNKALSLFYQVKGRKCNPTSSTYNSIILMLMQENHPDKVYDLYSEMCNEGNCFPDTITYSALMSAFAKLGQDNTAIRLFDEMKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_008488
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_008488
LocationChr02:101024433-101026475 (+)
DescriptionSimilar to At3g16010: Pentatricopeptide repeat-containing protein At3g16010
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g16010 Pentatricopeptide repeat-containing protein At3g16010. No verified direct reference in this release
At3g06920 Pentatricopeptide repeat-containing protein At3g06920. No verified direct reference in this release
At1g63080 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial. No verified direct reference in this release
At1g62670 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial. No verified direct reference in this release
At1g62910 Pentatricopeptide repeat-containing protein At1g62910. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008488 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000373 Group II intron splicing Biological Process
GO:0000963 mitochondrial RNA processing Biological Process
GO:0032981 mitochondrial respiratory chain complex I assembly Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G06920
ath:AT3G16010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.651
Rank 1 · LXL04_008488 · OH-1004
Plastid0.222
Rank 2 · LXL04_008488 · OH-1004
Nucleus0.072
Rank 3 · LXL04_008488 · OH-1004
Cytoplasm0.028
Rank 4 · LXL04_008488 · OH-1004
Cell membrane0.011
Rank 5 · LXL04_008488 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2169-203 aa
PF29070.1MSC6_N174-319 aa
PF13041.13PPR_2194-244 aa
PF13812.13PPR_3224-267 aa
PF12854.14PPR_1227-259 aa
PF13041.13PPR_2230-267 aa
PF01535.27PPR233-263 aa
PF23276.3TPR_24233-327 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_008488PF13041.13PPR_21692033.8e-114373.4
LXL04_008488PF29070.1MSC6_N1743194.7e-37128.7
LXL04_008488PF13041.13PPR_21942443.8e-114373.4
LXL04_008488PF13812.13PPR_32242675e-65216.2
LXL04_008488PF12854.14PPR_12272599.4e-85278.7
LXL04_008488PF13041.13PPR_22302673.8e-114373.4
LXL04_008488PF01535.27PPR2332631.2e-83270.4
LXL04_008488PF23276.3TPR_242333273.5e-31108.6
LXL04_008488PF17177.11PPR_long2503361.5e-29103.6
LXL04_008488PF13812.13PPR_32543135e-65216.2
LXL04_008488PF12854.14PPR_12612949.4e-85278.7
LXL04_008488PF13041.13PPR_22653143.8e-114373.4
LXL04_008488PF01535.27PPR2692981.2e-83270.4
LXL04_008488PF23276.3TPR_242703623.5e-31108.6
LXL04_008488PF12854.14PPR_12963289.4e-85278.7
LXL04_008488PF01535.27PPR3033331.2e-83270.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LW84Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g1601068.160%Swiss-Protstrong database homology
Q9M907Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g0692027.116%Swiss-Protweak database homology
Q9CAN5Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g63080, mitochondrial29.297%Swiss-Protweak database homology
Q9SXD1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g62670, mitochondrial29.102%Swiss-Protweak database homology
Q9LQ16Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g6291028.516%Swiss-Protweak database homology

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