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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_007504
Reference: OH-1004 Chr: Chr02 Coordinates: 50861900-50864572 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2673 bp · LXL04_007504|LXL04_007504|OH1004|cDNA

ATGGTGAGACTAAGATACCTAAAGCAAAATTCCCTAAAAGCCCTTCTTTCTCCTCTCAGTAACAACCACTTGTTCATCTATTCAACACTagcaaccaccaccaccaccaccaatCATCTGAGTCTAACCCCATTAATTCCCTCTTTTCCATCACCAGCCCATAAATCACAAAACCATGATTTGGCAGTAACATTTCGCGAATGGTTCAAGTCAAGTGGAAACCCTCTTCTTGACCAAATCCTCCACATCTTATCATCAAA...

CDS

Download CDS FASTA

2673 bp · LXL04_007504|LXL04_007504|OH1004|CDS

ATGGTGAGACTAAGATACCTAAAGCAAAATTCCCTAAAAGCCCTTCTTTCTCCTCTCAGTAACAACCACTTGTTCATCTATTCAACACTAGCAACCACCACCACCACCACCAATCATCTGAGTCTAACCCCATTAATTCCCTCTTTTCCATCACCAGCCCATAAATCACAAAACCATGATTTGGCAGTAACATTTCGCGAATGGTTCAAGTCAAGTGGAAACCCTCTTCTTGACCAAATCCTCCACATCTTATCATCAAA...

Protein

Download Protein FASTA

890 aa · LXL04_007504|LXL04_007504|OH1004|PROTEIN

MVRLRYLKQNSLKALLSPLSNNHLFIYSTLATTTTTTNHLSLTPLIPSFPSPAHKSQNHDLAVTFREWFKSSGNPLLDQILHILSSNENQDLKIEREAIDTALSRLNLHLTQSLVLDVLSYGKDVLSCTKFFDWAGRQPGFHHSRATFHAIFKILSKQQMMSIMFDYLDSYKKHRGHKTNFHNILVMGYAVAGKPEIALQLFGRMRFQGIDLDDFSYHVLLNSLVEEGNFNGVESVARQIKNRGFESEVTYSILVKGFCR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_007504
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_007504
LocationChr02:50861900-50864572 (-)
DescriptionSimilar to At1g71210: Pentatricopeptide repeat-containing protein At1g71210, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71210 Pentatricopeptide repeat-containing protein At1g71210, mitochondrial. No verified direct reference in this release
At3g06920 Pentatricopeptide repeat-containing protein At3g06920. No verified direct reference in this release
At1g74580 Putative pentatricopeptide repeat-containing protein At1g74580. No verified direct reference in this release
At1g12620 Pentatricopeptide repeat-containing protein At1g12620. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q76C99 Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007504 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G71210
ath:AT3G06920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.824
Rank 1 · LXL04_007504 · OH-1004
Plastid0.090
Rank 2 · LXL04_007504 · OH-1004
Nucleus0.063
Rank 3 · LXL04_007504 · OH-1004
Cytoplasm0.036
Rank 4 · LXL04_007504 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_007504 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2183-225 aa
PF13041.13PPR_2216-260 aa
PF12854.14PPR_1248-269 aa
PF13041.13PPR_2354-403 aa
PF13041.13PPR_2393-438 aa
PF13041.13PPR_2425-473 aa
PF13041.13PPR_2530-566 aa
PF13041.13PPR_2674-720 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_007504PF13041.13PPR_21832258.7e-71234.6
LXL04_007504PF13041.13PPR_22162608.7e-71234.6
LXL04_007504PF12854.14PPR_12482692.8e-42142.9
LXL04_007504PF13041.13PPR_23544038.7e-71234.6
LXL04_007504PF13041.13PPR_23934388.7e-71234.6
LXL04_007504PF13041.13PPR_24254738.7e-71234.6
LXL04_007504PF13041.13PPR_25305668.7e-71234.6
LXL04_007504PF13041.13PPR_26747208.7e-71234.6
LXL04_007504PF13812.13PPR_38038567e-2278.0
LXL04_007504PF13041.13PPR_28148608.7e-71234.6
LXL04_007504PF12854.14PPR_18438752.8e-42142.9
LXL04_007504PF13041.13PPR_28518868.7e-71234.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GZA6Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g71210, mitochondrial42.703%Swiss-Protmoderate database homology
Q9M907Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g0692020.217%Swiss-Protweak database homology
Q9CA58Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g7458022.151%Swiss-Protweak database homology
Q9ASZ8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1262025.646%Swiss-Protweak database homology
Q76C99Oryza sativa subsp. indicaProtein Rf1, mitochondrial23.259%Swiss-Protweak database homology

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