LXL04_000365 | RubberDandelionOmics

Gene overview

LXL04_000365

Reference: OH-1004 Chr: Chr01 Coordinates: 6693250-6697874 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1806 bp · LXL04_000365|LXL04_000365|OH1004|cDNA

ATGGGTATCTTCTTGGTTTTCTACCCTGAAGAACAGCAATTCAATTCTTCAACACCTTCATCAACATCTTCATTATCGCCATTTAAATCTCCCAAAATTAACGCGTTTCTCAAACGCACCAATTCCAGTCATATTTTCACCAGAGCTCAATCCACCATCTCCATTTGTGCTCTGCTCATCTTCCTCACTTTCCTCCTCTTCACTCTCTCATCCTTCGAGCCCAACAATGATTTCATCACCTCTCATAATCTTCATCATTA...

CDS

Download CDS FASTA

1806 bp · LXL04_000365|LXL04_000365|OH1004|CDS

ATGGGTATCTTCTTGGTTTTCTACCCTGAAGAACAGCAATTCAATTCTTCAACACCTTCATCAACATCTTCATTATCGCCATTTAAATCTCCCAAAATTAACGCGTTTCTCAAACGCACCAATTCCAGTCATATTTTCACCAGAGCTCAATCCACCATCTCCATTTGTGCTCTGCTCATCTTCCTCACTTTCCTCCTCTTCACTCTCTCATCCTTCGAGCCCAACAATGATTTCATCACCTCTCATAATCTTCATCATTA...

Protein

Download Protein FASTA

601 aa · LXL04_000365|LXL04_000365|OH1004|PROTEIN

MGIFLVFYPEEQQFNSSTPSSTSSLSPFKSPKINAFLKRTNSSHIFTRAQSTISICALLIFLTFLLFTLSSFEPNNDFITSHNLHHYRRFLSQNHPKFHPKPRWNPPALQGLGTLYTRGTMAMNELVICHVSESVTKKELKLFLRGFHRSGLASKSDLLFVFNSISTIDSFNDLIMEENDLFLKLVHRYKSELGNGSKAIDFPASFDVTRFVKSGKEADKGEPIWGRKIKSSNSSFSNGENGTESTRMSYGSVVGFGISE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000365`
TK1151 ID	TkA01G617350
OH-1004 ID	LXL04_000365
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.500
Protein coverage (%)	TK1151 94.323 / OH-1004 71.880 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000365

Location Chr01:6693250-6697874 (+)

Description Similar to CSLD5: Cellulose synthase-like protein D5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g02730`	Involved in stem and root growth.	Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03281.x
`At3g03050`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	AtCSLD3, a cellulose synthase-like gene important for root hair growth in arabidopsis.2001 · DOI: 10.1104/pp.126.2.575
`At5g16910`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0555600`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`Os06g0111800`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000365 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000919 cell plate assembly Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009625 response to insect Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0048367 shoot system development Biological Process

GO:0048767 root hair elongation Biological Process

GO:0071555 cell wall organization Biological Process

KEGG gene cross-reference

ath:AT1G02730

ath:AT3G03050

ath:AT5G16910

dosa:Os06g0111800

dosa:Os12g0555600

osa:4339895

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.567

Rank 1 · LXL04_000365 · OH-1004

Endoplasmic reticulum0.170

Rank 2 · LXL04_000365 · OH-1004

Cell membrane0.107

Rank 3 · LXL04_000365 · OH-1004

Nucleus0.102

Rank 4 · LXL04_000365 · OH-1004

Extracellular0.072

Rank 5 · LXL04_000365 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25002.2DUF7780107-410 aa

PF03552.21Cellulose_synt456-540 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000365	`PF25002.2`	DUF7780	107	410	1.9e-134	448.3
LXL04_000365	`PF03552.21`	Cellulose_synt	456	540	9.3e-11	41.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRW9`	Arabidopsis thaliana	Cellulose synthase-like protein D5	55.682%	Swiss-Prot	weak database homology
`Q9M9M4`	Arabidopsis thaliana	Cellulose synthase-like protein D3	47.619%	Swiss-Prot	weak database homology
`Q9LFL0`	Arabidopsis thaliana	Cellulose synthase-like protein D2	48.148%	Swiss-Prot	weak database homology
`Q2QNS6`	Oryza sativa subsp. japonica	Cellulose synthase-like protein D4	50.588%	Swiss-Prot	weak database homology
`Q9LHZ7`	Oryza sativa subsp. japonica	Cellulose synthase-like protein D2	45.000%	Swiss-Prot	weak database homology

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