LXL04_000022 | RubberDandelionOmics

Gene overview

LXL04_000022

Reference: OH-1004 Chr: Chr01 Coordinates: 521165-522482 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1059 bp · LXL04_000022|LXL04_000022|OH1004|cDNA

ATGGCAATTGATACACAATCTCCTCACATCCAAAACCCTAAAGTAGTACTCTTCTCACTAAGAACTAGTTTTTTCAAACTACGTACGCTCTCATCCATGGCTTCATCGTCTTCTTTTTCATGGTTTACTTTCGTATTTGGCTTGCTCTTATTTACAACCTCAATTGCTTCAGCTCAATTGACCGCCAACTTCTACAACCGAACTTGTCCAACTGCCATGTCCATCATTCGAGGCGGTGTTAGCACTGCAATTGCAAGAGA...

CDS

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1059 bp · LXL04_000022|LXL04_000022|OH1004|CDS

ATGGCAATTGATACACAATCTCCTCACATCCAAAACCCTAAAGTAGTACTCTTCTCACTAAGAACTAGTTTTTTCAAACTACGTACGCTCTCATCCATGGCTTCATCGTCTTCTTTTTCATGGTTTACTTTCGTATTTGGCTTGCTCTTATTTACAACCTCAATTGCTTCAGCTCAATTGACCGCCAACTTCTACAACCGAACTTGTCCAACTGCCATGTCCATCATTCGAGGCGGTGTTAGCACTGCAATTGCAAGAGA...

Protein

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352 aa · LXL04_000022|LXL04_000022|OH1004|PROTEIN

MAIDTQSPHIQNPKVVLFSLRTSFFKLRTLSSMASSSSFSWFTFVFGLLLFTTSIASAQLTANFYNRTCPTAMSIIRGGVSTAIARERRMGASLLRLHFHDCFVNGCDASVLLDDSATINGEKTAIPNANSIRGFEVVDTIKAQLESSCPGVVSCADLLTVAARDATVALGGQTWNLVLGRRDSTTASFNDANSELPSPFLDLPQLISVFGNKGFSPQDMVALTGAHEIGQARCGVFKNRIYNETNIDPSFALSMQRNCP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000022`
TK1151 ID	TkA01G640780
OH-1004 ID	LXL04_000022
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 90.909 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000022

Location Chr01:521165-522482 (-)

Description Similar to PNC1: Cationic peroxidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58400`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g05340`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000022 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010089 xylem development Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:1901430 positive regulation of syringal lignin biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009531 secondary cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004601 peroxidase activity Molecular Function

KEGG gene cross-reference

ahf:112743807

ath:AT5G05340

ath:AT5G58400

zma:100125639

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.482

Rank 1 · LXL04_000022 · OH-1004

Lysosome / Vacuole0.124

Rank 2 · LXL04_000022 · OH-1004

Cytoplasm0.116

Rank 3 · LXL04_000022 · OH-1004

Endoplasmic reticulum0.080

Rank 4 · LXL04_000022 · OH-1004

Cell membrane0.057

Rank 5 · LXL04_000022 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase78-314 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000022	`PF00141.29`	peroxidase	78	314	2.5e-82	276.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LVL1`	Arabidopsis thaliana	Peroxidase 68	56.869%	Swiss-Prot	strong database homology
`Q9FLC0`	Arabidopsis thaliana	Peroxidase 52	56.000%	Swiss-Prot	strong database homology

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