Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA08G198500`
Query reference	TK1151
Location	Chr08:51771423-51773525 (+)
Description	Similar to IRX9: Beta-1%2C4-xylosyltransferase IRX9 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032697 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 11 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37090`	Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls.	Development and application of a suite of polysaccharide-degrading enzymes for analyzing plant cell walls.2006 · DOI: 10.1073/pnas.0604632103 Arabidopsis irregular xylem8 and irregular xylem9: implications for the complexity of glucuronoxylan biosynthesis.2007 · DOI: 10.1105/tpc.106.049320 The irregular xylem9 mutant is deficient in xylan xylosyltransferase activity.2007 · DOI: 10.1093/pcp/pcm135 Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis.2007 · DOI: 10.1111/j.1365-313x.2007.03307.x The Arabidopsis family GT43 glycosyltransferases form two functionally nonredundant groups essential for the elongation of glucuronoxylan backbone.2010 · DOI: 10.1104/pp.110.155309 Analysis of the Arabidopsis IRX9/IRX9-L and IRX14/IRX14-L pairs of glycosyltransferase genes reveals critical contributions to biosynthesis of the hemicellulose glucuronoxylan.2010 · DOI: 10.1104/pp.110.154971 Arabidopsis family GT43 members are xylan xylosyltransferases required for the elongation of the xylan backbone.2012 · DOI: 10.1093/pcp/pcr158 Site-directed mutagenesis of IRX9, IRX9L and IRX14 proteins involved in xylan biosynthesis: glycosyltransferase activity is not required for IRX9 function in Arabidopsis.2014 · DOI: 10.1371/journal.pone.0105014
`At1g27600`	Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0123100`	Probable beta-1,4-xylosyltransferase involved in xylan biosynthesis in cell walls.	Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis.2014 · DOI: 10.4161/psb.27809
`Os03g0287800`	Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls.	No verified direct reference in this release
`Os01g0675500`	Probable beta-1,4-xylosyltransferase involved in xylan biosynthesis in cell walls.	Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis.2013 · DOI: 10.3389/fpls.2013.00083

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009834	plant-type secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010413	glucuronoxylan metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010417	glucuronoxylan biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010584	pollen exine formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.026; coverage=97.443; evalue=2.69e-67; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045492	xylan biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071555	cell wall organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000139	Golgi membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042285	xylosyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0047517	1,4-beta-D-xylan synthase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G27600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.026; coverage=97.443; evalue=2.69e-67	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G37090	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.342; coverage=101.42; evalue=2.44e-136	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0675500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.69; coverage=106.25; evalue=3.48e-56	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0287800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.031; coverage=99.716; evalue=4.7e-75	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0123100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.431; coverage=105.398; evalue=5.35e-74	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4325514	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.69; coverage=106.25; evalue=3.48e-56	UniProtKB/Swiss-Prot DAT 2026 current_release