Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA08G042510 |
|---|---|
| Query reference | TK1151 |
| Location | Chr08:10841546-10841857 (-) |
| Description | Similar to ELF4: Protein EARLY FLOWERING 4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021859 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g29950 |
Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. | No verified direct reference in this release |
At2g40080 |
Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. |
The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana.2002 · DOI: 10.1038/nature00954 HUA2 is required for the expression of floral repressors in Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2004.02300.x ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY.2005 · DOI: 10.1111/j.1365-313x.2005.02531.x ELF4 is required for oscillatory properties of the circadian clock.2007 · DOI: 10.1104/pp.107.096206
|
At2g06255 |
Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. | No verified direct reference in this release |
At1g17455 |
Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. | No verified direct reference in this release |
At1g72630 |
Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009585 | red, far-red light phototransduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009648 | photoperiodism | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009649 | entrainment of circadian clock | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009909 | regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010017 | red or far-red light signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010114 | response to red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042752 | regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042753 | positive regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048511 | rhythmic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048573 | photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.269; coverage=52.756; evalue=1.14e-15; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G17455 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.269; coverage=52.756; evalue=3.56e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G72630 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.269; coverage=52.756; evalue=1.14e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G06255 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.239; coverage=52.756; evalue=6.3e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G29950 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.055; coverage=57.48; evalue=8.06e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G40080 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.044; coverage=71.654; evalue=5.53e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release |