Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA08G037640 |
|---|---|
| Query reference | TK1151 |
| Location | Chr08:9586760-9593567 (-) |
| Description | Similar to LIG4: DNA ligase 4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_017960 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 35 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g57160 |
DNA ligase involved in DNA non-homologous end joining (NHEJ). |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0606450 |
DNA ligase involved in DNA non-homologous end joining (NHEJ); required for double-strand break (DSB) repair. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000012 | single strand break repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006284 | base-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006297 | nucleotide-excision repair, DNA gap filling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006302 | double-strand break repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006303 | double-strand break repair via nonhomologous end joining | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008283 | cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010165 | response to X-ray | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010212 | response to ionizing radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.313; coverage=79.048; evalue=9.56e-137; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010332 | response to gamma radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035019 | somatic stem cell population maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048146 | positive regulation of fibroblast proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051276 | chromosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.313; coverage=79.048; evalue=9.56e-137; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071479 | cellular response to ionizing radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IGI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071897 | DNA biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0075713 | establishment of integrated proviral latency | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097680 | double-strand break repair via classical nonhomologous end joining | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.517; coverage=59.432; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2001252 | positive regulation of chromosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000781 | chromosome, telomeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IC:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000793 | condensed chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005958 | DNA-dependent protein kinase-DNA ligase 4 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.313; coverage=79.048; evalue=9.56e-137; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032807 | DNA ligase IV complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070419 | nonhomologous end joining complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.313; coverage=79.048; evalue=9.56e-137; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000287 | magnesium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003909 | DNA ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003910 | DNA ligase (ATP) activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016874 | ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G57160 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.311; coverage=101.753; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:3981 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.173; coverage=79.132; evalue=1.8e-136 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173511 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.313; coverage=79.048; evalue=9.56e-137 | UniProtKB/Swiss-Prot DAT 2026 current_release |