Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA07G346080`
Query reference	TK1151
Location	Chr07:86511729-86513219 (+)
Description	Similar to SSU1: 3-isopropylmalate dehydratase small subunit 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_029773 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 10 GO annotations and 7 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43090`	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.	Functional specification of Arabidopsis isopropylmalate isomerases in glucosinolate and leucine biosynthesis.2010 · DOI: 10.1093/pcp/pcq113 The small subunit 1 of the Arabidopsis isopropylmalate isomerase is required for normal growth and development and the early stages of glucosinolate formation.2014 · DOI: 10.1371/journal.pone.0091071 In Arabidopsis thaliana Substrate Recognition and Tissue- as Well as Plastid Type-Specific Expression Define the Roles of Distinct Small Subunits of Isopropylmalate Isomerase.2020 · DOI: 10.3389/fpls.2020.00808
`At3g58990`	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate (Probable).	Functional specification of Arabidopsis isopropylmalate isomerases in glucosinolate and leucine biosynthesis.2010 · DOI: 10.1093/pcp/pcq113 In Arabidopsis thaliana Substrate Recognition and Tissue- as Well as Plastid Type-Specific Expression Define the Roles of Distinct Small Subunits of Isopropylmalate Isomerase.2020 · DOI: 10.3389/fpls.2020.00808
`At2g43100`	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate (Probable).	Functional specification of Arabidopsis isopropylmalate isomerases in glucosinolate and leucine biosynthesis.2010 · DOI: 10.1093/pcp/pcq113 In Arabidopsis thaliana Substrate Recognition and Tissue- as Well as Plastid Type-Specific Expression Define the Roles of Distinct Small Subunits of Isopropylmalate Isomerase.2020 · DOI: 10.3389/fpls.2020.00808

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009098	L-leucine biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019761	glucosinolate biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048229	gametophyte development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003861	3-isopropylmalate dehydratase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0120528	2-(omega-methylthio)alkylmalate dehydratase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.756; coverage=94.615; evalue=9.03e-88; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G43090	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=95.0; evalue=1.64e-93	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G43100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.5; coverage=76.923; evalue=3.85e-85	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G58990	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.756; coverage=94.615; evalue=9.03e-88	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	tma:TM0555	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.208; coverage=59.231; evalue=4.32e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	tmi:THEMA_01900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.208; coverage=59.231; evalue=4.32e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	tmw:THMA_0568	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.208; coverage=59.231; evalue=4.32e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	tye:THEYE_A0115	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.156; coverage=59.231; evalue=7.09e-33	UniProtKB/Swiss-Prot DAT 2026 current_release