Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA07G169510`
Query reference	TK1151
Location	Chr07:43504444-43508384 (+)
Description	Similar to HAB1: Protein phosphatase 2C 16 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028554 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 24 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g72770`	Key component and repressor of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, seed germination and inhibition of vegetative growth.	Gain-of-function and loss-of-function phenotypes of the protein phosphatase 2C HAB1 reveal its role as a negative regulator of abscisic acid signalling.2004 · DOI: 10.1046/j.1365-313x.2003.01966.x Enhancement of abscisic acid sensitivity and reduction of water consumption in Arabidopsis by combined inactivation of the protein phosphatases type 2C ABI1 and HAB1.2006 · DOI: 10.1104/pp.106.081018 A hypermorphic mutation in the protein phosphatase 2C HAB1 strongly affects ABA signaling in Arabidopsis.2006 · DOI: 10.1016/j.febslet.2006.07.047
`At1g17550`	Key component and repressor of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, seed germination and inhibition of vegetative growth.	No verified direct reference in this release
`At5g57050`	Repressor of the abscisic acid (ABA) signaling pathway that regulates numerous ABA responses, such as stomatal closure, osmotic water permeability of the plasma membrane (Pos), high light stress, response to glucose, seed germination and inhibition of vegetative growth.	Arabidopsis abi1-1 and abi2-1 phosphatase mutations reduce abscisic acid-induced cytoplasmic calcium rises in guard cells.1999 · DOI: 10.1105/tpc.11.9.1785 The genes ABI1 and ABI2 are involved in abscisic acid- and drought-inducible expression of the Daucus carota L. Dc3 promoter in guard cells of transgenic Arabidopsis thaliana (L.) Heynh.2000 · DOI: 10.1007/s004250050692 Analysis of Arabidopsis glucose insensitive mutants, gin5 and gin6, reveals a central role of the plant hormone ABA in the regulation of plant vegetative development by sugar.2000 · PMID: 10950871 The ABI1 and ABI2 protein phosphatases 2C act in a negative feedback regulatory loop of the abscisic acid signalling pathway.2001 · DOI: 10.1046/j.1365-313x.2001.00965.x Abscisic acid activation of plasma membrane Ca(2+) channels in guard cells requires cytosolic NAD(P)H and is differentially disrupted upstream and downstream of reactive oxygen species production in abi1-1 and abi2-1 protein phosphatase 2C mutants.2001 · DOI: 10.1105/tpc.010210 The role of ABA and the transpiration stream in the regulation of the osmotic water permeability of leaf cells.2001 · DOI: 10.1073/pnas.231471998 Hypersensitivity of abscisic acid-induced cytosolic calcium increases in the Arabidopsis farnesyltransferase mutant era1-2.2002 · DOI: 10.1105/tpc.010448 A calcium sensor and its interacting protein kinase are global regulators of abscisic acid signaling in Arabidopsis.2002 · DOI: 10.1016/s1534-5807(02)00229-0 Maternal Effects Govern Variable Dominance of Two Abscisic Acid Response Mutations in Arabidopsis thaliana.1994 · DOI: 10.1104/pp.105.4.1203 Hydrotropism in abscisic acid, wavy, and gravitropic mutants of Arabidopsis thaliana.2002 · DOI: 10.1007/s00425-002-0840-3 Control of Ascorbate Peroxidase 2 expression by hydrogen peroxide and leaf water status during excess light stress reveals a functional organisation of Arabidopsis leaves.2003 · DOI: 10.1046/j.1365-313x.2003.01656.x Synthesis of the Arabidopsis bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase enzyme of lysine catabolism is concertedly regulated by metabolic and stress-associated signals.2003 · DOI: 10.1104/pp.103.026294 Regulation of the ABA-sensitive Arabidopsis potassium channel gene GORK in response to water stress.2003 · DOI: 10.1016/s0014-5793(03)01118-9 The ABI2-dependent abscisic acid signalling controls HrpN-induced drought tolerance in Arabidopsis.2005 · DOI: 10.1007/s00425-004-1444-x Heat stress phenotypes of Arabidopsis mutants implicate multiple signaling pathways in the acquisition of thermotolerance.2005 · DOI: 10.1104/pp.105.062257 Role of abscisic acid (ABA) and Arabidopsis thaliana ABA-insensitive loci in low water potential-induced ABA and proline accumulation.2006 · DOI: 10.1093/jxb/erj026 Fibrillin expression is regulated by abscisic acid response regulators and is involved in abscisic acid-mediated photoprotection.2006 · DOI: 10.1073/pnas.0501720103 Interaction between sugar and abscisic acid signalling during early seedling development in Arabidopsis.2008 · DOI: 10.1007/s11103-008-9308-6 A plasma membrane receptor kinase, GHR1, mediates abscisic acid- and hydrogen peroxide-regulated stomatal movement in Arabidopsis.2012 · DOI: 10.1105/tpc.112.100107 Abscisic acid induces the alcohol dehydrogenase gene in Arabidopsis.1996 · DOI: 10.1104/pp.111.2.381 Differential abscisic acid regulation of guard cell slow anion channels in Arabidopsis wild-type and abi1 and abi2 mutants.1997 · DOI: 10.1105/tpc.9.3.409 Abscisic acid-independent and abscisic acid-dependent regulation of proline biosynthesis following cold and osmotic stresses in Arabidopsis thaliana.1997 · DOI: 10.1007/s004380050397 The Arabidopsis ABSCISIC ACID-INSENSITIVE2 (ABI2) and ABI1 genes encode homologous protein phosphatases 2C involved in abscisic acid signal transduction.1997 · DOI: 10.1105/tpc.9.5.759 Convergence of the abscisic acid, CO2, and extracellular calcium signal transduction pathways in stomatal guard cells.1997 · DOI: 10.1104/pp.114.4.1557

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0583100`	Probable protein phosphatase that may function in abscisic acid (ABA) signaling.	No verified direct reference in this release
`Os05g0592800`	Protein phosphatase that acts as a negative regulator of abscisic acid (ABA) signaling.	ABA Regulates Subcellular Redistribution of OsABI-LIKE2, a Negative Regulator in ABA Signaling, to Control Root Architecture and Drought Resistance in Oryza sativa.2015 · DOI: 10.1093/pcp/pcv154

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006470	protein dephosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009408	response to heat	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.354; coverage=84.797; evalue=9.23e-156; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.224; coverage=110.707; evalue=5.37e-168; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009787	regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.354; coverage=84.797; evalue=9.23e-156; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.354; coverage=84.797; evalue=9.23e-156; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902531	regulation of intracellular signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.224; coverage=110.707; evalue=5.37e-168; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.224; coverage=110.707; evalue=5.37e-168; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.435; coverage=77.302; evalue=1.52e-159; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.382; coverage=75.161; evalue=6.77e-165; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008287	protein serine/threonine phosphatase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.224; coverage=110.707; evalue=5.37e-168; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004721	phosphoprotein phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IDA:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004722	protein serine/threonine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.224; coverage=110.707; evalue=5.37e-168; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005509	calcium ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016791	phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019900	kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019901	protein kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.224; coverage=110.707; evalue=5.37e-168; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G17550	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=63.435; coverage=77.302; evalue=1.52e-159	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G72770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.224; coverage=110.707; evalue=5.37e-168	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G26080	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.125; coverage=102.784; evalue=5.26e-146	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0583100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.382; coverage=75.161; evalue=6.77e-165	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0592800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.354; coverage=84.797; evalue=9.23e-156	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4339797	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.354; coverage=84.797; evalue=9.23e-156	UniProtKB/Swiss-Prot DAT 2026 current_release