Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA07G163840`
Query reference	TK1151
Location	Chr07:42102391-42103548 (+)
Description	Similar to HKT1: Sodium transporter HKT1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028502 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 14 GO annotations and 7 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10310`	Sodium transporter protein, which plays a central role in plant tolerance to salt.	The Arabidopsis HKT1 gene homolog mediates inward Na(+) currents in xenopus laevis oocytes and Na(+) uptake in Saccharomyces cerevisiae.2000 · DOI: 10.1104/pp.122.4.1249 AtHKT1 is a salt tolerance determinant that controls Na(+) entry into plant roots.2001 · DOI: 10.1073/pnas.241501798 Glycine residues in potassium channel-like selectivity filters determine potassium selectivity in four-loop-per-subunit HKT transporters from plants.2002 · DOI: 10.1073/pnas.082123799 Altered shoot/root Na+ distribution and bifurcating salt sensitivity in Arabidopsis by genetic disruption of the Na+ transporter AtHKT1.2002 · DOI: 10.1016/s0014-5793(02)03488-9 Functional analysis of AtHKT1 in Arabidopsis shows that Na(+) recirculation by the phloem is crucial for salt tolerance.2003 · DOI: 10.1093/emboj/cdg207 AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta.2004 · DOI: 10.1104/pp.104.042234 Microarray-based rapid cloning of an ion accumulation deletion mutant in Arabidopsis thaliana.2004 · DOI: 10.1073/pnas.0404780101

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0175000`	Functions as a highly-selective sodium transporter.	Diversity in expression patterns and functional properties in the rice HKT transporter family.2009 · DOI: 10.1104/pp.109.138008 Identification of rice cornichon as a possible cargo receptor for the Golgi-localized sodium transporter OsHKT1;3.2015 · DOI: 10.1093/jxb/erv069
`Os04g0607500`	Functions as a low-affinity sodium transporter.	Sodium transport and HKT transporters: the rice model.2003 · DOI: 10.1046/j.1365-313x.2003.01764.x Diversity in expression patterns and functional properties in the rice HKT transporter family.2009 · DOI: 10.1104/pp.109.138008
`Os04g0607600`	Probable cation transporter.	No verified direct reference in this release
`UniProt: Q93XI5`	Seems to be involved in regulation of potassium-sodium homeostasis.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006813	potassium ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006814	sodium ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75; UniProt GO evidence=IDA:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035725	sodium ion transmembrane transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.055; coverage=96.791; evalue=1.04e-71; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0055075	potassium ion homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.26; coverage=97.594; evalue=6.77e-65; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000139	Golgi membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.055; coverage=96.791; evalue=1.04e-71; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.055; coverage=96.791; evalue=1.04e-71; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008324	monoatomic cation transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.055; coverage=96.791; evalue=1.04e-71; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015079	potassium ion transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015081	sodium ion transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75; UniProt GO evidence=IDA:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015293	symporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.26; coverage=97.594; evalue=6.77e-65; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G10310	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.21; coverage=86.631; evalue=1.08e-75	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0175000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.055; coverage=96.791; evalue=1.04e-71	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0607500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.187; coverage=97.326; evalue=1.26e-70	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0701700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.26; coverage=97.594; evalue=6.77e-65	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4328468	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.055; coverage=96.791; evalue=1.04e-71	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4341971	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.26; coverage=97.594; evalue=6.77e-65	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:9266695	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.187; coverage=97.326; evalue=1.26e-70	UniProtKB/Swiss-Prot DAT 2026 current_release