基因注释
展示当前基因的功能描述、GO/KEGG 注释及分物种同源证据。命中结果按查询版本、序列来源和比对证据分层显示。
查询结果
| 基因 ID | TkA06G312000 |
|---|---|
| 当前查询版本 | TK1151 |
| 位置 | Chr06:78252025-78259291 (+) |
| 描述 | Similar to XRN3: 5'-3' exoribonuclease 3 (Arabidopsis thaliana OX%3D3702) |
| 注释来源组装 | GCA_047496595.1_OSU_TarKok_2.0 |
功能注释来源:OH1004 · LXL04_023513 · GCA_047496595.1_OSU_TarKok_2.0。此处为经 ID 对照查得的 OH1004 注释;下方拟南芥/水稻同源表使用当前查询参考的独立蛋白比对。
当前查询返回来自 OH1004 注释条目的 28 条 GO 注释和 5 条 KEGG 基因交叉引用;只下载当前查询结果,不据此推断 KEGG 通路成员。
拟南芥 / 水稻参考基因与文献
文献对应拟南芥或水稻参考基因;橡胶草的功能关联来自当前参考组装的蛋白序列比对。
拟南芥
| 参考基因 ID | 可能功能 | 对应论文 / DOI |
|---|---|---|
At1g75660 |
具有 5'->3' 核糖核酸外切酶活性。 | |
UniProt: Q9FQ02 |
具有5'->3'外核糖核酸酶活性。 | 暂无已核实直接文献 |
At1g54490 |
具有 5'->3' 核糖核酸外切酶活性。 |
AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets.2004 · DOI: 10.1016/j.molcel.2004.06.006 A link between mRNA turnover and RNA interference in Arabidopsis.2004 · DOI: 10.1126/science.1101092
|
水稻
当前来源表未检出该物种的同源命中。
GO / KEGG
以下 GO/KEGG 注释源自上述 OH1004 注释条目,保留原始同源转移证据及覆盖度;其来源物种范围与拟南芥/水稻直接比对表不同。
| 类型 | ID | 名称 | 命名空间 | 证据 | 来源 |
|---|---|---|---|---|---|
| GO | GO:0000956 | nuclear-transcribed mRNA catabolic process | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000967 | rRNA 5'-end processing | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.333; 覆盖度=86.593; E 值=0.0; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.333; 覆盖度=86.593; E 值=0.0; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006369 | termination of RNA polymerase II transcription | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006401 | RNA catabolic process | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007017 | microtubule-based process | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.333; 覆盖度=86.593; E 值=0.0; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010587 | miRNA catabolic process | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016070 | RNA metabolic process | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060149 | negative regulation of post-transcriptional gene silencing | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016235 | aggresome | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.333; 覆盖度=86.593; E 值=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000175 | 3'-5'-RNA exonuclease activity | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.333; 覆盖度=86.593; E 值=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001147 | transcription termination site sequence-specific DNA binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004518 | nuclease activity | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004534 | 5'-3' RNA exonuclease activity | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008409 | 5'-3' exonuclease activity | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G75660 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=69.325; 覆盖度=98.589; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G42540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=63.164; 覆盖度=87.298; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:22803 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=45.304; 覆盖度=91.23; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:24128 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=46.333; 覆盖度=86.593; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173960 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=45.083; 覆盖度=91.23; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |