Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA06G155190`
Query reference	TK1151
Location	Chr06:40985874-40986437 (-)
Description	Similar to NAP2: NAC domain-containing protein 2 (Solanum lycopersicum OX%3D4081)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_024318 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 34 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71930`	May bind promoters of secondary cell-wall genes and activate transcription.	Transcription switches for protoxylem and metaxylem vessel formation.2005 · DOI: 10.1101/gad.1331305 Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots.2008 · DOI: 10.1111/j.1365-313x.2008.03533.x A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325 ASYMMETRIC LEAVES2-LIKE19/LATERAL ORGAN BOUNDARIES DOMAIN30 and ASL20/LBD18 regulate tracheary element differentiation in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061796 MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis.2009 · DOI: 10.1105/tpc.108.063321 MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis.2009 · DOI: 10.1093/pcp/pcp139 VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 effectively induce transdifferentiation into xylem vessel elements under control of an induction system.2010 · DOI: 10.1104/pp.110.154013 Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis.2010 · DOI: 10.1093/mp/ssq062 VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation.2011 · DOI: 10.1111/j.1365-313x.2011.04514.x The Arabidopsis thaliana checkpoint kinase WEE1 protects against premature vascular differentiation during replication stress.2011 · DOI: 10.1105/tpc.110.082768 Verticillium infection triggers VASCULAR-RELATED NAC DOMAIN7-dependent de novo xylem formation and enhances drought tolerance in Arabidopsis.2012 · DOI: 10.1105/tpc.112.103374
`At2g18060`	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity).	Arabidopsis NAC domain proteins, VND1 to VND5, are transcriptional regulators of secondary wall biosynthesis in vessels.2014 · DOI: 10.1371/journal.pone.0105726
`At1g56010`	Transcriptional activator that mediates auxin signaling to promote lateral root development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0530400`	Probable transcription factor involved in stress response.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009646	response to absence of light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009819	drought recovery	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.818; coverage=63.462; evalue=4.63e-13; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009834	plant-type secondary cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.362; coverage=45.192; evalue=7.76e-13; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010029	regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042542	response to hydrogen peroxide	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043068	positive regulation of programmed cell death	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.818; coverage=63.462; evalue=4.63e-13; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048527	lateral root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048829	root cap development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.362; coverage=45.192; evalue=7.76e-13; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080187	floral organ senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090400	stress-induced premature senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900057	positive regulation of leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902074	response to salt	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902265	abscisic acid homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1904250	positive regulation of age-related resistance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000377	regulation of reactive oxygen species metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.818; coverage=63.462; evalue=4.63e-13; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.818; coverage=63.462; evalue=4.63e-13; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.818; coverage=63.462; evalue=4.63e-13; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.818; coverage=63.462; evalue=4.63e-13; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.362; coverage=45.192; evalue=7.76e-13; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.818; coverage=63.462; evalue=4.63e-13; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G33480	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.836; coverage=64.423; evalue=8.24e-13	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G10500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.818; coverage=63.462; evalue=4.63e-13	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G39610	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.24; coverage=82.212; evalue=6.91e-13	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0530400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.362; coverage=45.192; evalue=7.76e-13	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	sly:101248665	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.429; coverage=67.308; evalue=3.53e-13	UniProtKB/Swiss-Prot DAT 2026 current_release