Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA06G041020`
Query reference	TK1151
Location	Chr06:11091347-11092465 (-)
Description	Similar to MKP1: Protein-tyrosine-phosphatase MKP1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025801 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55270`	Protein-tyrosine-phosphatase that acts as a negative regulator of MPK6 and MPK3 signaling by dephosphorylating and repressing MPK6 and MPK3.	Mitogen-activated protein kinase phosphatase is required for genotoxic stress relief in Arabidopsis.2001 · DOI: 10.1101/gad.192601 Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1.2002 · DOI: 10.1093/emboj/cdf646 The role of NADPH oxidase and MAP kinase phosphatase in UV-B-dependent gene expression in Arabidopsis.2006 · DOI: 10.1111/j.1365-3040.2006.01555.x MAP kinase phosphatase1 and protein tyrosine phosphatase1 are repressors of salicylic acid synthesis and SNC1-mediated responses in Arabidopsis.2009 · DOI: 10.1105/tpc.109.067678 Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria.2011 · DOI: 10.1111/j.1365-313x.2011.04588.x Arabidopsis MAP kinase phosphatase 1 is phosphorylated and activated by its substrate AtMPK6.2011 · DOI: 10.1007/s00299-011-1064-4 Arabidopsis MAP kinase phosphatase 1 and its target MAP kinases 3 and 6 antagonistically determine UV-B stress tolerance, independent of the UVR8 photoreceptor pathway.2011 · DOI: 10.1111/j.1365-313x.2011.04725.x
`At3g06110`	Has a dual specificity toward Ser/Thr and Tyr-containing proteins.	Arabidopsis MAPK phosphatase 2 (MKP2) positively regulates oxidative stress tolerance and inactivates the MPK3 and MPK6 MAPKs.2007 · DOI: 10.1074/jbc.m701888200 MAPK phosphatase MKP2 mediates disease responses in Arabidopsis and functionally interacts with MPK3 and MPK6.2010 · DOI: 10.1111/j.1365-313x.2010.04297.x Regulation of MAPK signaling and cell death by MAPK phosphatase MKP2.2010 · DOI: 10.4161/psb.5.11.13645

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006470	protein dephosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.312; coverage=21.937; evalue=5.82e-23; UniProt GO evidence=IDA:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010193	response to ozone	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010224	response to UV-B	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010225	response to UV-C	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016311	dephosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=21.937; evalue=5.54e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034051	negative regulation of plant-type hypersensitive response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034599	cellular response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035556	intracellular signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IC:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070373	negative regulation of ERK1 and ERK2 cascade	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=21.937; evalue=5.54e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902065	response to L-glutamate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.312; coverage=21.937; evalue=2.41e-23; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=21.937; evalue=5.54e-24; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004721	phosphoprotein phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=21.937; evalue=5.54e-24; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004722	protein serine/threonine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004725	protein tyrosine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004860	protein kinase inhibitor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008330	protein tyrosine/threonine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=21.937; evalue=5.54e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016791	phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=21.937; evalue=5.54e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0017017	MAP kinase tyrosine/serine/threonine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0033549	MAP kinase phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0033550	MAP kinase tyrosine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990439	MAP kinase serine/threonine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=21.937; evalue=5.54e-24; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G06110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.129; coverage=22.08; evalue=1.35e-23	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G55270	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.883; coverage=56.125; evalue=9.71e-167	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	gga:395642	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.961; coverage=21.937; evalue=5.54e-24	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:1846	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.312; coverage=21.937; evalue=2.41e-23	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	rno:60587	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.312; coverage=21.937; evalue=5.82e-23	UniProtKB/Swiss-Prot DAT 2026 current_release