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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA06G000860
Query referenceTK1151
LocationChr06:176875-177252 (-)
DescriptionSimilar to SF1: Splicing factor-like protein 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_026607 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g51300 Necessary for the splicing of pre-mRNA.
A homolog of splicing factor SF1 is essential for development and is involved in the alternative splicing of pre-mRNA in Arabidopsis thaliana.2014 · DOI: 10.1111/tpj.12491

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045292mRNA cis splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048024regulation of mRNA splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.045; coverage=42.615; evalue=1.24e-74; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000243commitment complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.045; coverage=42.615; evalue=1.24e-74; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IDA:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005681spliceosomal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IDA:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.045; coverage=42.615; evalue=1.24e-74; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071004U2-type prespliceosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.045; coverage=42.615; evalue=1.24e-74; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGafm:AFUA_3G10840KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.029; coverage=41.768; evalue=9.88e-73UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G51300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.377; coverage=73.85; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcnb:CNBD3480KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.045; coverage=42.615; evalue=1.24e-74UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcne:CND02880KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.045; coverage=42.615; evalue=1.24e-74UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGncr:NCU04110KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.617; coverage=40.436; evalue=1.06e-72UniProtKB/Swiss-Prot DAT 2026 current_release