Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA04G309280 |
|---|---|
| Query reference | TK1151 |
| Location | Chr04:78025939-78032452 (-) |
| Description | Similar to TSB: Tryptophan synthase beta chain 2%2C chloroplastic (Camptotheca acuminata OX%3D16922) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_039776 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 10 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g54810 |
The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine. | No verified direct reference in this release |
At4g27070 |
The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000162 | L-tryptophan biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.75; coverage=110.497; evalue=1.07e-100; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.75; coverage=110.497; evalue=1.07e-100; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009684 | indoleacetic acid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.75; coverage=110.497; evalue=1.07e-100; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.75; coverage=110.497; evalue=1.07e-100; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.75; coverage=110.497; evalue=1.07e-100; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.75; coverage=110.497; evalue=1.07e-100; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.657; coverage=124.033; evalue=5.03e-104; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009941 | chloroplast envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.98; coverage=109.945; evalue=9.71e-96; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004834 | tryptophan synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.657; coverage=124.033; evalue=5.03e-104; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019904 | protein domain specific binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.75; coverage=110.497; evalue=1.07e-100; UniProt GO evidence=IPI:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G27070 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.98; coverage=109.945; evalue=9.71e-96 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G54810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.75; coverage=110.497; evalue=1.07e-100 | UniProtKB/Swiss-Prot DAT 2026 current_release |