Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA04G273860`
Query reference	TK1151
Location	Chr04:69182440-69192995 (+)
Description	Similar to BIG: Auxin transport protein BIG (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_034928 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02260`	Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development).	BIG: a calossin-like protein required for polar auxin transport in Arabidopsis.2001 · DOI: 10.1101/gad.905201 Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses.2003 · DOI: 10.1046/j.1365-313x.2003.01779.x The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2004.02287.x CRM1/BIG-mediated auxin action regulates Arabidopsis inflorescence development.2007 · DOI: 10.1093/pcp/pcm094 Arabidopsis mutants define downstream branches in the phototransduction pathway.1994 · DOI: 10.1101/gad.8.3.339 Reduced naphthylphthalamic acid binding in the tir3 mutant of Arabidopsis is associated with a reduction in polar auxin transport and diverse morphological defects.1997 · DOI: 10.1105/tpc.9.5.745
`At3g01320`	Acts as a transcriptional repressor.	PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors.2010 · DOI: 10.1016/j.jmb.2009.11.065
`At1g70060`	Acts as a transcriptional repressor.	No verified direct reference in this release
`At5g15020`	Acts as a transcriptional repressor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0247700`	Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development) (By similarity).	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000122	negative regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=5.22; evalue=2.73e-11; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=5.22; evalue=2.73e-11; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009620	response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009640	photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009734	auxin-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.333; coverage=5.22; evalue=4.51e-11; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009826	unidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009926	auxin polar transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010311	lateral root formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.333; coverage=5.22; evalue=4.51e-11; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048281	inflorescence morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071596	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140455	cytoplasm protein quality control	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000118	histone deacetylase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=5.22; evalue=2.73e-11; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=5.22; evalue=2.73e-11; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=5.22; evalue=2.73e-11; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009506	plasmodesma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070822	Sin3-type complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.333; coverage=5.22; evalue=4.51e-11; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003714	transcription corepressor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=5.22; evalue=2.73e-11; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G24190	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.333; coverage=5.22; evalue=4.51e-11	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G70060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.333; coverage=5.22; evalue=2.73e-11	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G01320	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.913; coverage=5.336; evalue=1.06e-10	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G02260	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.105; coverage=4.408; evalue=2.53e-13	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os09g0247700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=91.892; coverage=4.292; evalue=3.7e-12	UniProtKB/Swiss-Prot DAT 2026 current_release