Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA04G147720`
Query reference	TK1151
Location	Chr04:38265551-38266339 (+)
Description	Similar to RUP2: WD repeat-containing protein RUP2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035273 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 30 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g52250`	Functions in association with RUP2 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5, likely in coordination with DHU1.	Negative feedback regulation of UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.2010 · DOI: 10.1073/pnas.0914532107 EFO1 and EFO2, encoding putative WD-domain proteins, have overlapping and distinct roles in the regulation of vegetative development and flowering of Arabidopsis.2011 · DOI: 10.1093/jxb/erq336 DHU1 negatively regulates UV-B signaling via its direct interaction with COP1 and RUP1.2017 · DOI: 10.1016/j.bbrc.2017.07.110
`At5g23730`	Functions in association with RUP1 as repressor of UV-B-induced photomorphogenesis mediated by UVR8 and HY5.	Negative feedback regulation of UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.2010 · DOI: 10.1073/pnas.0914532107 EFO1 and EFO2, encoding putative WD-domain proteins, have overlapping and distinct roles in the regulation of vegetative development and flowering of Arabidopsis.2011 · DOI: 10.1093/jxb/erq336
`At3g15354`	Repressor of photomorphogenesis in the light.	The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light.2003 · DOI: 10.1046/j.1365-313x.2003.01813.x Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth.2006 · DOI: 10.1111/j.1365-313x.2006.02812.x Arabidopsis SPA proteins regulate photoperiodic flowering and interact with the floral inducer CONSTANS to regulate its stability.2006 · DOI: 10.1242/dev.02481
`At2g32950`	E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness.	Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis.2002 · DOI: 10.1101/gad.969702 Short Hypocotyl in White Light1 Interacts with Elongated Hypocotyl5 (HY5) and Constitutive Photomorphogenic1 (COP1) and Promotes COP1-Mediated Degradation of HY5 during Arabidopsis Seedling Development.2015 · DOI: 10.1104/pp.15.01184 PHYTOCHROME INTERACTING FACTOR8 Inhibits Phytochrome A-Mediated Far-Red Light Responses in Arabidopsis.2020 · DOI: 10.1105/tpc.19.00515 Role of a COP1 interactive protein in mediating light-regulated gene expression in arabidopsis.1998 · DOI: 10.1105/tpc.10.7.1083
`At1g53090`	Repressor of photomorphogenesis in the light.	The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light.2003 · DOI: 10.1046/j.1365-313x.2003.01813.x Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth.2006 · DOI: 10.1111/j.1365-313x.2006.02812.x Arabidopsis SPA proteins regulate photoperiodic flowering and interact with the floral inducer CONSTANS to regulate its stability.2006 · DOI: 10.1242/dev.02481

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009585	red, far-red light phototransduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009640	photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009641	shade avoidance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009647	skotomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009649	entrainment of circadian clock	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.486; coverage=89.646; evalue=2.7e-137; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.486; coverage=89.646; evalue=2.7e-137; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009963	positive regulation of flavonoid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010114	response to red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.522; coverage=92.371; evalue=1.23e-126; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010218	response to far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.522; coverage=92.371; evalue=1.23e-126; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010224	response to UV-B	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.486; coverage=89.646; evalue=2.7e-137; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043254	regulation of protein-containing complex assembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.486; coverage=89.646; evalue=2.7e-137; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046283	anthocyanin-containing compound metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048573	photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000152	nuclear ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.486; coverage=89.646; evalue=2.7e-137; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.486; coverage=89.646; evalue=2.7e-137; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016604	nuclear body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.486; coverage=89.646; evalue=2.7e-137; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004672	protein kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.615; coverage=88.556; evalue=7.31e-57; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.615; coverage=88.556; evalue=7.31e-57; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G32950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=87.466; evalue=5.39e-61	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G15354	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.615; coverage=88.556; evalue=7.31e-57	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G23730	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.486; coverage=89.646; evalue=2.7e-137	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G52250	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.522; coverage=92.371; evalue=1.23e-126	UniProtKB/Swiss-Prot DAT 2026 current_release