Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA04G124370`
Query reference	TK1151
Location	Chr04:32318656-32321383 (-)
Description	Similar to RING1: E3 ubiquitin-protein ligase RING1 (Gossypium hirsutum OX%3D3635)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035544 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19950`	E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.	No verified direct reference in this release
`At3g56580`	E3 ubiquitin-protein ligase that promotes osmotic stress and abscisic acid (ABA) responses.	The atrzf1 mutation of the novel RING-type E3 ubiquitin ligase increases proline contents and enhances drought tolerance in Arabidopsis.2013 · DOI: 10.1016/j.plantsci.2012.12.007 PCA22 acts as a suppressor of atrzf1 to mediate proline accumulation in response to abiotic stress in Arabidopsis.2017 · DOI: 10.1093/jxb/erx069
`At2g40830`	Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro.	No verified direct reference in this release
`At5g59550`	E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses.	Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress.2012 · DOI: 10.1016/j.bbrc.2012.02.131

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.122; coverage=74.085; evalue=3.6e-38; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.652; coverage=69.577; evalue=5.34e-43; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.652; coverage=69.577; evalue=5.34e-43; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.122; coverage=74.085; evalue=3.6e-38; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.652; coverage=69.577; evalue=5.34e-43; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.122; coverage=74.085; evalue=3.6e-38; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.346; coverage=89.577; evalue=8.95e-98; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0047484	regulation of response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.652; coverage=69.577; evalue=5.34e-43; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090378	seed trichome elongation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.346; coverage=89.577; evalue=8.95e-98; UniProt GO evidence=IEP:AgBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902006	negative regulation of L-proline biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.652; coverage=69.577; evalue=5.34e-43; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.608; coverage=81.972; evalue=8.26e-95; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.346; coverage=89.577; evalue=8.95e-98; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009505	plant-type cell wall	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.122; coverage=74.085; evalue=3.6e-38; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.122; coverage=74.085; evalue=3.6e-38; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.346; coverage=89.577; evalue=8.95e-98; UniProt GO evidence=IDA:AgBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.346; coverage=89.577; evalue=8.95e-98; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.346; coverage=89.577; evalue=8.95e-98; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G40830	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.122; coverage=74.085; evalue=3.6e-38	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G19950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.608; coverage=81.972; evalue=8.26e-95	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G56580	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.652; coverage=69.577; evalue=5.34e-43	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0488800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.708; coverage=75.211; evalue=1.92e-37	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4339152	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.708; coverage=75.211; evalue=1.92e-37	UniProtKB/Swiss-Prot DAT 2026 current_release