Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA04G012240 |
|---|---|
| Query reference | TK1151 |
| Location | Chr04:3044655-3049724 (-) |
| Description | Similar to XPD: General transcription and DNA repair factor IIH helicase subunit XPD (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_036984 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 41 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g03190 |
ATP-dependent 5'-3' DNA helicase, component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to CDK-activating kinase (CAK), involved in transcription by RNA polymerase II. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006283 | transcription-coupled nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.397; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006362 | transcription elongation by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006366 | transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006367 | transcription initiation at RNA polymerase II promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007059 | chromosome segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008283 | cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008340 | determination of adult lifespan | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009408 | response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009650 | UV protection | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009791 | post-embryonic development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030198 | extracellular matrix organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035264 | multicellular organism growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040016 | embryonic cleavage | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042274 | ribosomal small subunit biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045951 | positive regulation of mitotic recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048009 | insulin-like growth factor receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901990 | regulation of mitotic cell cycle phase transition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000439 | transcription factor TFIIH core complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005669 | transcription factor TFIID complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005675 | transcription factor TFIIH holo complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005819 | spindle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070516 | CAK-ERCC2 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071817 | MMXD complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003678 | DNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003684 | damaged DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030674 | protein-macromolecule adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043139 | 5'-3' DNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051539 | 4 iron, 4 sulfur cluster binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G03190 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.773; coverage=100.132; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:100125238 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=57.671; coverage=96.433; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:2068 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.671; coverage=96.433; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:13871 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.534; coverage=96.433; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |