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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G000010
Query referenceTK1151
LocationChr04:1-6121 (-)
DescriptionSimilar to MSH4: DNA mismatch repair protein MSH4 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_026608 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g17380 Involved in meiotic recombination in association with MSH5.
The Arabidopsis MutS homolog AtMSH4 functions at an early step in recombination: evidence for two classes of recombination in Arabidopsis.2004 · DOI: 10.1101/gad.317504
Zip4/Spo22 is required for class I CO formation but not for synapsis completion in Arabidopsis thaliana.2007 · DOI: 10.1371/journal.pgen.0030083
Replication protein A (AtRPA1a) is required for class I crossover formation but is dispensable for meiotic DNA break repair.2009 · DOI: 10.1038/emboj.2008.295

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006298mismatch repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.474; coverage=100.245; evalue=3.4e-142; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007129homologous chromosome pairing at meiosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007131reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007283spermatogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.185; coverage=100.735; evalue=1.01e-134; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007292female gamete generationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.185; coverage=100.735; evalue=1.01e-134; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010777meiotic mismatch repair involved in reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045143homologous chromosome segregationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051321meiotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.185; coverage=100.735; evalue=1.01e-134; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000228nuclear chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.854; coverage=93.015; evalue=3.46e-73; UniProt GO evidence=IDA:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000793condensed chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.185; coverage=100.735; evalue=1.01e-134; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000794condensed nuclear chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000795synaptonemal complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.474; coverage=100.245; evalue=3.4e-142; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.185; coverage=100.735; evalue=1.01e-134; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.474; coverage=100.245; evalue=3.4e-142; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005713recombination noduleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.474; coverage=100.245; evalue=3.4e-142; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.565; coverage=73.775; evalue=1.29e-70; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043073germ cell nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0062128MutSgamma complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.854; coverage=93.015; evalue=3.46e-73; UniProt GO evidence=IPI:SGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990391DNA repair complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.185; coverage=100.735; evalue=1.01e-134; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.474; coverage=100.245; evalue=3.4e-142; UniProt GO evidence=TAS:ProtIncUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003684damaged DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.565; coverage=73.775; evalue=1.29e-70; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003690double-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030983mismatched DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140664ATP-dependent DNA damage sensor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G17380KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.785; coverage=99.632; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcya:CYA_2035KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.565; coverage=73.775; evalue=1.29e-70UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:4438KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.474; coverage=100.245; evalue=3.4e-142UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:55993KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.185; coverage=100.735; evalue=1.01e-134UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsce:YFL003CKEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.854; coverage=93.015; evalue=3.46e-73UniProtKB/Swiss-Prot DAT 2026 current_release