Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`TkA03G456490`
Query reference	TK1151
Location	Chr03:113973119-113980291 (-)
Description	Similar to LBD30: LOB domain-containing protein 30 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022728 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g58190`	Involved in lateral root formation.	ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis.2007 · DOI: 10.1105/tpc.106.047761
`At2g42440`	LOB domain-containing protein 17.	No verified direct reference in this release
`At2g45420`	Involved in the positive regulation of tracheary element (TE) differentiation.	ASYMMETRIC LEAVES2-LIKE19/LATERAL ORGAN BOUNDARIES DOMAIN30 and ASL20/LBD18 regulate tracheary element differentiation in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061796 LBD18/ASL20 regulates lateral root formation in combination with LBD16/ASL18 downstream of ARF7 and ARF19 in Arabidopsis.2009 · DOI: 10.1104/pp.109.143685 LBD18 acts as a transcriptional activator that directly binds to the EXPANSIN14 promoter in promoting lateral root emergence of Arabidopsis.2013 · DOI: 10.1111/tpj.12013 The AP2/EREBP gene PUCHI Co-Acts with LBD16/ASL18 and LBD18/ASL20 downstream of ARF7 and ARF19 to regulate lateral root development in Arabidopsis.2013 · DOI: 10.1093/pcp/pct081 EXPANSINA17 up-regulated by LBD18/ASL20 promotes lateral root formation during the auxin response.2013 · DOI: 10.1093/pcp/pct105 Lateral Organ Boundaries Domain16 and 18 Act Downstream of the AUXIN1 and LIKE-AUXIN3 Auxin Influx Carriers to Control Lateral Root Development in Arabidopsis.2015 · DOI: 10.1104/pp.15.00578
`At2g42430`	Transcriptional activator.	ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis.2007 · DOI: 10.1105/tpc.106.047761 LBD18/ASL20 regulates lateral root formation in combination with LBD16/ASL18 downstream of ARF7 and ARF19 in Arabidopsis.2009 · DOI: 10.1104/pp.109.143685 The AP2/EREBP gene PUCHI Co-Acts with LBD16/ASL18 and LBD18/ASL20 downstream of ARF7 and ARF19 to regulate lateral root development in Arabidopsis.2013 · DOI: 10.1093/pcp/pct081 Lateral Organ Boundaries Domain16 and 18 Act Downstream of the AUXIN1 and LIKE-AUXIN3 Auxin Influx Carriers to Control Lateral Root Development in Arabidopsis.2015 · DOI: 10.1104/pp.15.00578

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0149100`	Acts as a positive regulator of adventitious (crown) root formation by promoting its initiation.	Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling.2005 · DOI: 10.1105/tpc.105.030981 ARL1, a LOB-domain protein required for adventitious root formation in rice.2005 · DOI: 10.1111/j.1365-313x.2005.02434.x Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.2011 · DOI: 10.1186/1471-2164-12-387

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.947; coverage=34.296; evalue=1.89e-49; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009755	hormone-mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.092; coverage=82.671; evalue=2.03e-59; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009867	jasmonic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.947; coverage=34.296; evalue=1.89e-49; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010089	xylem development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.092; coverage=82.671; evalue=2.03e-59; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010199	organ boundary specification between lateral organs and the meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.092; coverage=82.671; evalue=2.03e-59; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010311	lateral root formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.425; coverage=91.697; evalue=3.42e-58; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.092; coverage=82.671; evalue=2.03e-59; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900150	regulation of defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.947; coverage=34.296; evalue=1.89e-49; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.092; coverage=82.671; evalue=2.03e-59; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.091; coverage=39.711; evalue=5e-50; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.425; coverage=91.697; evalue=3.42e-58; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001216	DNA-binding transcription activator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.092; coverage=82.671; evalue=2.03e-59; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046982	protein heterodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.425; coverage=91.697; evalue=3.42e-58; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990841	promoter-specific chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.091; coverage=39.711; evalue=5e-50; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G42430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.091; coverage=39.711; evalue=5e-50	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G45420	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.425; coverage=91.697; evalue=3.42e-58	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G03760	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.947; coverage=34.296; evalue=1.89e-49	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G00210	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.041; coverage=88.448; evalue=2.38e-51	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G00220	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.092; coverage=82.671; evalue=2.03e-59	UniProtKB/Swiss-Prot DAT 2026 current_release