Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA03G393340 |
|---|---|
| Query reference | TK1151 |
| Location | Chr03:97597965-97606823 (-) |
| Description | Similar to AGL31: Agamous-like MADS-box protein AGL31 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009018 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 37 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g77080 |
Probable transcription factor involved in the negative regulation of flowering time in both long and short days, probably through the photoperiodic and vernalization pathways. | No verified direct reference in this release |
At5g10140 |
Putative transcription factor that seems to play a central role in the regulation of flowering time in the late-flowering phenotype by interacting with 'FRIGIDA', the autonomous and the vernalization flowering pathways. | No verified direct reference in this release |
At5g65080 |
Transcription factor involved in the negative regulation of flowering time in short days, probably through the photoperiodic and vernalization pathways. |
Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold.2003 · DOI: 10.1105/tpc.009506 The E2 ubiquitin-conjugating enzymes, AtUBC1 and AtUBC2, play redundant roles and are involved in activation of FLC expression and repression of flowering in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2008.03684.x The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5.2010 · DOI: 10.1073/pnas.1010834107 Role of VIN3-LIKE 2 in facultative photoperiodic flowering response in Arabidopsis.2010 · DOI: 10.4161/psb.5.12.14035 AGAMOUS-LIKE 6 is a floral promoter that negatively regulates the FLC/MAF clade genes and positively regulates FT in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2010.04402.x
|
At5g65050 |
Probable transcription factor that prevents vernalization by short periods of cold. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009553 | embryo sac development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009909 | regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.478; coverage=85.185; evalue=8.45e-31; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009910 | negative regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009911 | positive regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.541; coverage=83.796; evalue=2.07e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010022 | meristem determinacy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010048 | vernalization response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010093 | specification of floral organ identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010094 | specification of carpel identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010221 | negative regulation of vernalization response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010228 | vegetative to reproductive phase transition of meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.541; coverage=83.796; evalue=2.07e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010582 | floral meristem determinacy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048316 | seed development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048437 | floral organ development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.541; coverage=83.796; evalue=2.07e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048449 | floral organ formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IGI:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048455 | stamen formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048457 | floral whorl morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048459 | floral whorl structural organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048509 | regulation of meristem development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IGI:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048573 | photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.478; coverage=85.185; evalue=8.45e-31; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048833 | specification of floral organ number | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080060 | integument development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080112 | seed growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=IMP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000028 | regulation of photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.217; coverage=85.185; evalue=1.15e-31; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.541; coverage=83.796; evalue=2.07e-30; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30; UniProt GO evidence=TAS:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046983 | protein dimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G77080 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.478; coverage=85.185; evalue=8.45e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G45650 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.541; coverage=83.796; evalue=2.07e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G65050 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=37.668; coverage=103.241; evalue=7.01e-32 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G65060 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.217; coverage=85.185; evalue=1.15e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os02g0682200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.051; coverage=90.278; evalue=2.53e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release |