Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA03G358800 |
|---|---|
| Query reference | TK1151 |
| Location | Chr03:88520642-88521784 (-) |
| Description | Similar to At3g19360: Zinc finger CCCH domain-containing protein 39 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008559 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 54 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g35430 |
Zinc finger CCCH domain-containing protein 28. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000165 | MAPK cascade | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000288 | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=25.081; coverage=149.029; evalue=1.58e-17; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006402 | mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009611 | response to wounding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010837 | regulation of keratinocyte proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031086 | nuclear-transcribed mRNA catabolic process, deadenylation-independent decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032680 | regulation of tumor necrosis factor production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032703 | negative regulation of interleukin-2 production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032897 | negative regulation of viral transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035278 | miRNA-mediated gene silencing by inhibition of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0038066 | p38MAPK cascade | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042594 | response to starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043488 | regulation of mRNA stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044344 | cellular response to fibroblast growth factor stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060213 | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061158 | 3'-UTR-mediated mRNA destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070935 | 3'-UTR-mediated mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071222 | cellular response to lipopolysaccharide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071356 | cellular response to tumor necrosis factor | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071364 | cellular response to epidermal growth factor stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071385 | cellular response to glucocorticoid stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097011 | cellular response to granulocyte macrophage colony-stimulating factor stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900153 | positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901835 | positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904246 | negative regulation of polynucleotide adenylyltransferase activity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904582 | positive regulation of intracellular mRNA localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905869 | negative regulation of 3'-UTR-mediated mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000637 | positive regulation of miRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000932 | P-body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=25.081; coverage=149.029; evalue=1.58e-17; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.138; coverage=140.777; evalue=9.07e-14; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010494 | cytoplasmic stress granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000900 | mRNA regulatory element binding translation repressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.138; coverage=140.777; evalue=9.07e-14; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=25.081; coverage=149.029; evalue=1.58e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=25.081; coverage=149.029; evalue=1.58e-17; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=25.081; coverage=149.029; evalue=1.58e-17; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=25.081; coverage=149.029; evalue=1.58e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IPI:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019901 | protein kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019957 | C-C chemokine binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031072 | heat shock protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035925 | mRNA 3'-UTR AU-rich region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044877 | protein-containing complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IPI:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070063 | RNA polymerase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071889 | 14-3-3 protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0160134 | protein-RNA sequence-specific adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G32360 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.138; coverage=140.777; evalue=9.07e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G35430 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.119; coverage=85.922; evalue=9.34e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G19360 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=25.081; coverage=149.029; evalue=1.58e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os08g0159800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.421; coverage=92.233; evalue=4.83e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:7538 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.714; coverage=40.777; evalue=3.95e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4344715 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.421; coverage=92.233; evalue=4.83e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release |