Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA03G111400 |
|---|---|
| Query reference | TK1151 |
| Location | Chr03:28491381-28493090 (+) |
| Description | Similar to CRS2: Chloroplastic group IIB intron splicing facilitator CRS2%2C chloroplastic (Zea mays OX%3D4577) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_007077 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 8 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g38290 |
Required for the splicing of group IIB introns in chloroplasts. | No verified direct reference in this release |
At5g16140 |
Required for the splicing of group IIB introns in chloroplasts. | No verified direct reference in this release |
At5g19830 |
The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0132800 |
Required for the splicing of group IIB introns in chloroplasts. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.528; coverage=86.531; evalue=7.4e-116; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.528; coverage=86.531; evalue=7.4e-116; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.391; coverage=80.408; evalue=3.06e-80; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.067; coverage=97.143; evalue=2.73e-115; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.528; coverage=86.531; evalue=7.4e-116; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.528; coverage=86.531; evalue=7.4e-116; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000049 | tRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.528; coverage=86.531; evalue=7.4e-116; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004045 | peptidyl-tRNA hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.528; coverage=86.531; evalue=7.4e-116; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G16140 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.067; coverage=97.143; evalue=2.73e-115 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G19830 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.391; coverage=80.408; evalue=3.06e-80 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G38290 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=67.073; coverage=100.408; evalue=3.44e-115 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0132800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.963; coverage=87.347; evalue=4.3e-113 | UniProtKB/Swiss-Prot DAT 2026 current_release |