Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

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Gene ID	`TkA02G593470`
Query reference	TK1151
Location	Chr02:153094625-153096640 (+)
Description	Similar to CLPT1: ATP-dependent Clp protease ATP-binding subunit CLPT1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012005 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 10 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g25370`	Accessory protein regulating the assembly of the plastidial Clp protease system.	Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins.2011 · DOI: 10.1105/tpc.110.082321 Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.2015 · DOI: 10.1105/tpc.15.00106
`At4g12060`	Accessory protein regulating the assembly of the plastidial Clp protease system.	Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins.2011 · DOI: 10.1105/tpc.110.082321 Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.2015 · DOI: 10.1105/tpc.15.00106

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0230100`	Molecular chaperone that may interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast.	No verified direct reference in this release
`Os04g0397100`	Molecular chaperone that may interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0034605	cellular response to heat	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.615; coverage=53.719; evalue=4.16e-14; UniProt GO evidence=IEA:TreeGrafter	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.943; coverage=71.901; evalue=5.31e-75; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.943; coverage=71.901; evalue=5.31e-75; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009532	plastid stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.943; coverage=71.901; evalue=5.31e-75; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.943; coverage=71.901; evalue=5.31e-75; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009579	thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.943; coverage=71.901; evalue=5.31e-75; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009941	chloroplast envelope	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.943; coverage=71.901; evalue=5.31e-75; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.615; coverage=53.719; evalue=4.16e-14; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016887	ATP hydrolysis activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.615; coverage=53.719; evalue=4.16e-14; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043424	protein histidine kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.392; coverage=65.289; evalue=9.88e-65; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G12060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.392; coverage=65.289; evalue=9.88e-65	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G25370	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.943; coverage=71.901; evalue=5.31e-75	UniProtKB/Swiss-Prot DAT 2026 current_release