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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA02G174600
Query referenceTK1151
LocationChr02:44869140-44871356 (+)
DescriptionSimilar to LIP5: Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_016211 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 20 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g26750 Involved in the endosomal multivesicular bodies (MVB) pathway.
The Arabidopsis AAA ATPase SKD1 is involved in multivesicular endosome function and interacts with its positive regulator LYST-INTERACTING PROTEIN5.2007 · DOI: 10.1105/tpc.106.049346
Arabidopsis LIP5, a positive regulator of multivesicular body biogenesis, is a critical target of pathogen-responsive MAPK cascade in plant basal defense.2014 · DOI: 10.1371/journal.ppat.1004243

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016192vesicle-mediated transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016197endosomal transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016236macroautophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.818; coverage=58.95; evalue=4.57e-28; UniProt GO evidence=NAS:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032511late endosome to vacuole transport via multivesicular body sorting pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036258multivesicular body assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.818; coverage=58.95; evalue=4.57e-28; UniProt GO evidence=NAS:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071985multivesicular body sorting pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.818; coverage=58.95; evalue=4.57e-28; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080001mucilage extrusion from seed coatBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098542defense response to other organismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900426positive regulation of defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1903335regulation of vacuolar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904903ESCRT III complex disassemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.818; coverage=58.95; evalue=4.57e-28; UniProt GO evidence=NAS:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005771multivesicular bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.818; coverage=58.95; evalue=4.57e-28; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010008endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070062extracellular exosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.818; coverage=58.95; evalue=4.57e-28; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G26750KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.628; coverage=105.728; evalue=2.18e-126UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGddi:DDB_G0271488KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.267; coverage=38.425; evalue=7.06e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:51534KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.818; coverage=58.95; evalue=4.57e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpon:100173666KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.818; coverage=58.95; evalue=7.33e-28UniProtKB/Swiss-Prot DAT 2026 current_release