Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G613540`
Query reference	TK1151
Location	Chr01:154695013-154699977 (+)
Description	Similar to PHL5: Myb family transcription factor PHL5 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000409 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g06800`	Myb family transcription factor PHL5.	No verified direct reference in this release
`At5g29000`	Transcription factor acting as central integrator of phosphate starvation responses.	A central regulatory system largely controls transcriptional activation and repression responses to phosphate starvation in Arabidopsis.2010 · DOI: 10.1371/journal.pgen.1001102 Arabidopsis ferritin 1 (AtFer1) gene regulation by the phosphate starvation response 1 (AtPHR1) transcription factor reveals a direct molecular link between iron and phosphate homeostasis.2013 · DOI: 10.1074/jbc.m113.482281

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XYN9`	Transcription factor binding to specific DNA sequences of target genes promoters, such as the motif R1BS 5'-NAKATNCN-3' and the motif P1BS 5'-GNATATNC-3' to trigger their expression (By similarity).	No verified direct reference in this release
`Os04g0665600`	Transcription factor binding to specific DNA sequences of target genes promoters, such as the motif R1BS 5'-NAKATNCN-3' and the motif P1BS 5'-GNATATNC-3' to trigger their expression.	An SPX-RLI1 Module Regulates Leaf Inclination in Response to Phosphate Availability in Rice.2018 · DOI: 10.1105/tpc.17.00738 Modulation of nitrate-induced phosphate response by the MYB transcription factor RLI1/HINGE1 in the nucleus.2021 · DOI: 10.1016/j.molp.2020.12.005
`UniProt: B8B5N8`	Transcription factor involved in phosphate starvation signaling (By similarity).	No verified direct reference in this release
`Os07g0438800`	Transcription factor involved in phosphate starvation signaling.	OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants.2008 · DOI: 10.1104/pp.107.111443 Role of OsPHR2 on phosphorus homeostasis and root hairs development in rice (Oryza sativa L.).2008 · DOI: 10.4161/psb.3.9.5781 OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice.2010 · DOI: 10.1111/j.1365-313x.2010.04170.x SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice.2014 · DOI: 10.1105/tpc.114.123208 Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner.2014 · DOI: 10.1073/pnas.1404680111 Genetic manipulation of a high-affinity PHR1 target cis-element to improve phosphorous uptake in Oryza sativa L.2015 · DOI: 10.1007/s11103-015-0289-y Integrative Comparison of the Role of the PHOSPHATE RESPONSE1 Subfamily in Phosphate Signaling and Homeostasis in Rice.2015 · DOI: 10.1104/pp.15.00736 Modulation of nitrate-induced phosphate response by the MYB transcription factor RLI1/HINGE1 in the nucleus.2021 · DOI: 10.1016/j.molp.2020.12.005

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.605; coverage=32.238; evalue=9.58e-61; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.605; coverage=32.238; evalue=9.58e-61; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009742	brassinosteroid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010167	response to nitrate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010966	regulation of phosphate transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016036	cellular response to phosphate starvation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016132	brassinosteroid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051511	negative regulation of unidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000024	regulation of leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.605; coverage=32.238; evalue=9.58e-61; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.605; coverage=32.238; evalue=9.58e-61; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.605; coverage=32.238; evalue=9.58e-61; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G06800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.605; coverage=32.238; evalue=9.58e-61	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0665600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4337318	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.538; coverage=32.033; evalue=1.2e-54	UniProtKB/Swiss-Prot DAT 2026 current_release